Hb_002157_080

Information

Type -
Description -
Location Contig2157: 50006-56056
Sequence    

Annotation

kegg
ID rcu:RCOM_0247960
description hypothetical protein
nr
ID XP_012065652.1
description PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22291: 50009-55730 , PASA_asmbl_22292: 55954-56097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_080 0.0 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
2 Hb_000015_170 0.0738629663 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002542_110 0.0757720917 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_001488_180 0.0766813892 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
5 Hb_009658_030 0.0767071131 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
6 Hb_001473_110 0.0801774881 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
7 Hb_000347_400 0.0835279308 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_004916_010 0.0848882793 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
9 Hb_000029_060 0.0862961273 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
10 Hb_002686_230 0.0894819153 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_006275_020 0.0902307783 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
12 Hb_000103_390 0.0915179015 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
13 Hb_004435_030 0.0941270579 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
14 Hb_004204_010 0.0947674201 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
15 Hb_000170_130 0.0948950388 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_000120_130 0.0957033127 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
17 Hb_001405_160 0.0959988044 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
18 Hb_001717_010 0.0960480822 - - F-box and wd40 domain protein, putative [Ricinus communis]
19 Hb_000836_380 0.096974959 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
20 Hb_009288_010 0.0971955224 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002157_080 Hb_002157_080 Hb_000015_170 Hb_000015_170 Hb_002157_080--Hb_000015_170 Hb_002542_110 Hb_002542_110 Hb_002157_080--Hb_002542_110 Hb_001488_180 Hb_001488_180 Hb_002157_080--Hb_001488_180 Hb_009658_030 Hb_009658_030 Hb_002157_080--Hb_009658_030 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_002157_080--Hb_000347_400 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002542_110--Hb_001488_180 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220 Hb_005977_070 Hb_005977_070 Hb_009658_030--Hb_005977_070 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_066920_030 Hb_066920_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_001473_110--Hb_000479_070 Hb_001473_110--Hb_000028_130 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_001473_110--Hb_000347_400 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52069 20.4958 9.79564 11.1444 4.26232 7.96724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.50098 9.75476 11.0718 7.30133 15.1305

CAGE analysis