Hb_005977_070

Information

Type -
Description -
Location Contig5977: 40330-49299
Sequence    

Annotation

kegg
ID rcu:RCOM_1034260
description splicing endonuclease positive effector sen1, putative
nr
ID XP_012092747.1
description PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
swissprot
ID Q00416
description Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2
trembl
ID B9RJG9
description Splicing endonuclease positive effector sen1, putative OS=Ricinus communis GN=RCOM_1034260 PE=4 SV=1
Gene Ontology
ID GO:0004519
description uncharacterized atp-dependent helicase -like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50423: 40448-40648 , PASA_asmbl_50426: 48960-49210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_070 0.0 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
2 Hb_004204_010 0.0503941401 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
3 Hb_023344_160 0.0588526129 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
4 Hb_009658_030 0.063480405 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
5 Hb_066920_030 0.0676621241 - - PREDICTED: adagio protein 1 [Jatropha curcas]
6 Hb_004705_020 0.0711506988 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_000017_220 0.071191708 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
8 Hb_005408_030 0.0733194339 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_001488_180 0.0735296759 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_000028_130 0.0739609243 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
11 Hb_001865_070 0.0744280455 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
12 Hb_001377_100 0.0744847386 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_002631_210 0.0756309175 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
14 Hb_007441_160 0.0761901802 - - RNA binding protein, putative [Ricinus communis]
15 Hb_001828_170 0.0778071347 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_004374_110 0.0779036664 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
17 Hb_000347_390 0.0790053173 - - PREDICTED: exportin-T [Jatropha curcas]
18 Hb_001723_100 0.0790190171 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
19 Hb_005186_040 0.0802639864 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
20 Hb_001635_120 0.0832602542 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]

Gene co-expression network

sample Hb_005977_070 Hb_005977_070 Hb_004204_010 Hb_004204_010 Hb_005977_070--Hb_004204_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_009658_030 Hb_009658_030 Hb_005977_070--Hb_009658_030 Hb_066920_030 Hb_066920_030 Hb_005977_070--Hb_066920_030 Hb_004705_020 Hb_004705_020 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_001488_180 Hb_001488_180 Hb_004204_010--Hb_001488_180 Hb_005408_030 Hb_005408_030 Hb_004204_010--Hb_005408_030 Hb_004204_010--Hb_004705_020 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_002631_210 Hb_002631_210 Hb_023344_160--Hb_002631_210 Hb_023344_160--Hb_004204_010 Hb_001723_100 Hb_001723_100 Hb_023344_160--Hb_001723_100 Hb_001691_200 Hb_001691_200 Hb_023344_160--Hb_001691_200 Hb_171554_040 Hb_171554_040 Hb_023344_160--Hb_171554_040 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_002157_080 Hb_002157_080 Hb_009658_030--Hb_002157_080 Hb_001404_110 Hb_001404_110 Hb_066920_030--Hb_001404_110 Hb_066920_030--Hb_001723_100 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000017_220--Hb_000025_280 Hb_001473_110 Hb_001473_110 Hb_000017_220--Hb_001473_110 Hb_000017_220--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06232 8.52713 3.52392 5.7802 2.88727 4.02502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6744 2.89485 5.61273 5.74869 7.84797

CAGE analysis