Hb_001723_100

Information

Type -
Description -
Location Contig1723: 110039-114038
Sequence    

Annotation

kegg
ID rcu:RCOM_1002710
description yth domain-containing protein, putative
nr
ID XP_012084159.1
description PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067JYU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19063 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16271: 113662-114892 , PASA_asmbl_16273: 110080-114842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_100 0.0 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
2 Hb_020178_040 0.0605115399 - - conserved hypothetical protein [Ricinus communis]
3 Hb_066920_030 0.0610324897 - - PREDICTED: adagio protein 1 [Jatropha curcas]
4 Hb_002272_030 0.0638992102 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
5 Hb_001404_110 0.067221122 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
6 Hb_002631_210 0.0760719709 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
7 Hb_000347_400 0.0788144221 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_005977_070 0.0790190171 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_000951_130 0.0800669995 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
10 Hb_002042_050 0.084560835 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
11 Hb_009658_030 0.085278371 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
12 Hb_001828_170 0.0868918814 - - PREDICTED: protein TPLATE [Jatropha curcas]
13 Hb_000656_390 0.0870128491 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
14 Hb_023344_160 0.0871182361 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
15 Hb_000270_120 0.0871934365 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
16 Hb_022425_060 0.0871992243 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
17 Hb_003607_130 0.0892702961 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_002830_010 0.0895782452 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_004204_010 0.0909560071 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
20 Hb_009288_010 0.0910075322 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001723_100 Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_001723_100--Hb_020178_040 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_002272_030 Hb_002272_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_000347_400 Hb_000347_400 Hb_001723_100--Hb_000347_400 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_020178_040--Hb_000347_400 Hb_066920_030--Hb_001404_110 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_066920_030--Hb_000347_400 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010 Hb_001404_110--Hb_002830_010 Hb_000008_440 Hb_000008_440 Hb_001404_110--Hb_000008_440 Hb_001404_110--Hb_002272_030 Hb_001404_110--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_001691_200 Hb_001691_200 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_001473_110 Hb_001473_110 Hb_000347_400--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0294 30.6096 16.0095 24.8359 10.9272 8.89751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1459 12.8781 24.8207 18.843 24.4475

CAGE analysis