Hb_000243_260

Information

Type -
Description -
Location Contig243: 247937-254466
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006636mg
description hypothetical protein
nr
ID XP_012065317.1
description PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
swissprot
ID Q9SD33
description UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2
trembl
ID A0A067LH71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06481 PE=4 SV=1
Gene Ontology
ID GO:0004822
description upf0183 protein at3g51130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25384: 247893-254393 , PASA_asmbl_25385: 247893-254393 , PASA_asmbl_25386: 250801-251227 , PASA_asmbl_25387: 253721-253929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_260 0.0 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
2 Hb_002042_050 0.0569452305 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
3 Hb_011618_070 0.0714654308 - - NMDA receptor-regulated protein [Medicago truncatula]
4 Hb_020178_040 0.0727184439 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011883_020 0.0748027064 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_003758_010 0.0820197101 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
7 Hb_002631_210 0.0822975566 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
8 Hb_002272_030 0.0823211976 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
9 Hb_000025_350 0.0823818516 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
10 Hb_000363_290 0.0843028453 - - fimbrin, putative [Ricinus communis]
11 Hb_008289_040 0.0855924735 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
12 Hb_002071_070 0.0857636078 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
13 Hb_001817_170 0.0870669471 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
14 Hb_002445_030 0.0878374289 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
15 Hb_000476_060 0.0901322374 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000304_080 0.0918087931 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_001124_130 0.092018505 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_003037_020 0.0921458841 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
19 Hb_000206_160 0.0924895988 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
20 Hb_005074_020 0.0942243023 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_260 Hb_000243_260 Hb_002042_050 Hb_002042_050 Hb_000243_260--Hb_002042_050 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_020178_040 Hb_020178_040 Hb_000243_260--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_003758_010 Hb_003758_010 Hb_000243_260--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_000243_260--Hb_002631_210 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_002042_050--Hb_020178_040 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_001488_020 Hb_001488_020 Hb_011618_070--Hb_001488_020 Hb_011618_070--Hb_003758_010 Hb_011618_070--Hb_002631_210 Hb_011618_070--Hb_002042_050 Hb_000206_160 Hb_000206_160 Hb_011618_070--Hb_000206_160 Hb_020178_040--Hb_002272_030 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_003758_010--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_003758_010--Hb_027506_010 Hb_033312_040 Hb_033312_040 Hb_003758_010--Hb_033312_040 Hb_003758_010--Hb_000206_160 Hb_006189_020 Hb_006189_020 Hb_003758_010--Hb_006189_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86379 21.1669 23.4913 21.0071 9.27359 7.85095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.191 10.7925 18.7017 21.7379 18.1124

CAGE analysis