Hb_006100_020

Information

Type -
Description -
Location Contig6100: 34833-42574
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01980g
description hypothetical protein
nr
ID XP_012075094.1
description PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
swissprot
ID Q8RY59
description Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1
trembl
ID A0A067KGT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50984: 34809-42576 , PASA_asmbl_50985: 34880-42545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006100_020 0.0 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
2 Hb_002042_050 0.0572473459 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
3 Hb_033312_130 0.0573539727 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
4 Hb_001141_240 0.0584803561 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_048476_080 0.0617432893 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
6 Hb_001008_130 0.0618920344 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
7 Hb_000169_020 0.0636539369 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
8 Hb_000139_080 0.0637918026 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
9 Hb_000173_190 0.0639005006 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_170 0.0646225108 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
11 Hb_004218_180 0.0653531241 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
12 Hb_001635_110 0.0661049911 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
13 Hb_073171_070 0.0671235478 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
14 Hb_001488_020 0.0676313399 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
15 Hb_000960_080 0.0686966777 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
16 Hb_000103_290 0.0704890377 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
17 Hb_033312_040 0.0722328656 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_000773_040 0.072445573 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
19 Hb_000270_190 0.0726684811 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
20 Hb_003098_070 0.0731709516 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]

Gene co-expression network

sample Hb_006100_020 Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_001008_130 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_000844_050 Hb_000844_050 Hb_048476_080--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_001507_050 Hb_001507_050 Hb_048476_080--Hb_001507_050 Hb_048476_080--Hb_001008_130 Hb_001008_130--Hb_006210_010 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_001008_130--Hb_000960_080 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000169_020--Hb_000139_080 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00326 12.8154 12.5214 12.4098 5.71973 5.79656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46387 7.99316 6.85696 11.2965 15.385

CAGE analysis