Hb_000035_100

Information

Type -
Description -
Location Contig35: 134740-143328
Sequence    

Annotation

kegg
ID rcu:RCOM_0921600
description nucleic acid binding protein, putative
nr
ID XP_002515436.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID O04716
description DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2
trembl
ID B9RNW7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0921600 PE=4 SV=1
Gene Ontology
ID GO:0044763
description nucleic acid binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36399: 134701-143295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_100 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_116349_130 0.0602570667 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
3 Hb_033312_130 0.0636342691 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
4 Hb_000030_140 0.0647079135 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
5 Hb_008165_020 0.06646885 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_000173_190 0.0670939994 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003929_210 0.0672934563 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_000926_150 0.068062538 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
9 Hb_013358_060 0.0709045166 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
10 Hb_048476_080 0.0709199853 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
11 Hb_000428_030 0.0713390153 - - hypothetical protein RCOM_1520720 [Ricinus communis]
12 Hb_000331_100 0.0718377367 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
13 Hb_000664_120 0.0725626782 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
14 Hb_000996_020 0.0726962915 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_000373_170 0.0731441452 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
16 Hb_000110_350 0.0736077932 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
17 Hb_170077_010 0.0744301446 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_000960_080 0.0745219153 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
19 Hb_005701_050 0.075765616 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
20 Hb_000318_150 0.0759609801 - - RNA-binding protein Nova-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000035_100 Hb_000035_100 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_000926_150 Hb_000926_150 Hb_116349_130--Hb_000926_150 Hb_004551_020 Hb_004551_020 Hb_116349_130--Hb_004551_020 Hb_003939_060 Hb_003939_060 Hb_116349_130--Hb_003939_060 Hb_005408_030 Hb_005408_030 Hb_116349_130--Hb_005408_030 Hb_000428_030 Hb_000428_030 Hb_116349_130--Hb_000428_030 Hb_033312_130--Hb_003929_210 Hb_001008_130 Hb_001008_130 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_000260_760 Hb_000260_760 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000030_140--Hb_000996_020 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_001635_110 Hb_001635_110 Hb_000173_190--Hb_001635_110 Hb_000173_190--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000173_190--Hb_000318_150 Hb_001300_280 Hb_001300_280 Hb_000173_190--Hb_001300_280 Hb_000173_190--Hb_000960_080 Hb_003929_210--Hb_003939_060 Hb_003929_210--Hb_000110_350 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1036 49.6056 32.2013 28.4151 18.5901 13.3698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.151 15.9594 13.1415 31.4892 39.5669

CAGE analysis