Hb_008165_020

Information

Type -
Description -
Location Contig8165: 46289-58062
Sequence    

Annotation

kegg
ID rcu:RCOM_0272140
description hypothetical protein
nr
ID XP_012081190.1
description PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZIW2
description CCR4-NOT transcription complex subunit 10 OS=Gallus gallus GN=CNOT10 PE=2 SV=1
trembl
ID A0A067K2C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17029 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ccr4-not transcription complex subunit 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59440: 47793-57771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008165_020 0.0 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
2 Hb_000331_100 0.0454601142 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
3 Hb_009476_120 0.0621333602 - - Clathrin heavy chain 1 [Glycine soja]
4 Hb_001414_010 0.0622201727 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
5 Hb_001507_050 0.0631465424 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000428_030 0.0656428732 - - hypothetical protein RCOM_1520720 [Ricinus communis]
7 Hb_005305_100 0.0660470955 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
8 Hb_000035_100 0.06646885 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003964_110 0.0667355175 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
10 Hb_000960_080 0.0671350878 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
11 Hb_000172_360 0.0698976495 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
12 Hb_000260_760 0.0707399646 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_048476_080 0.0713978605 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
14 Hb_013358_060 0.0716095549 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_170077_010 0.0725692778 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
16 Hb_160608_010 0.0729099947 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
17 Hb_003661_010 0.0730278895 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
18 Hb_000300_030 0.0732098887 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
19 Hb_000844_050 0.0732510786 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_004375_110 0.07448462 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]

Gene co-expression network

sample Hb_008165_020 Hb_008165_020 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_000331_100--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_000331_100--Hb_009476_120 Hb_009476_120--Hb_001414_010 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_001414_010--Hb_160608_010 Hb_000960_080 Hb_000960_080 Hb_001507_050--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_001507_050--Hb_003680_020 Hb_048476_080 Hb_048476_080 Hb_001507_050--Hb_048476_080 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_001507_050--Hb_160608_010 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72013 14.0739 10.1478 11.1824 4.50086 4.72134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75007 3.74684 3.5663 9.6011 11.1523

CAGE analysis