Hb_000270_170

Information

Type -
Description -
Location Contig270: 153899-160094
Sequence    

Annotation

kegg
ID rcu:RCOM_1513170
description Epstein-Barr nuclear antigen, putative
nr
ID XP_012080179.1
description PREDICTED: formin-like protein 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11562 PE=4 SV=1
Gene Ontology
ID GO:0005634
description formin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28172: 153906-157968 , PASA_asmbl_28173: 158005-159984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_170 0.0 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
2 Hb_000960_080 0.0565735047 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
3 Hb_001507_050 0.0620466843 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_011674_040 0.0635448714 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
5 Hb_006100_020 0.0646225108 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_000318_150 0.0650770043 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_001488_020 0.0669225118 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
8 Hb_033312_130 0.0695852945 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
9 Hb_000059_240 0.0705719833 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
10 Hb_005260_030 0.0707700451 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
11 Hb_004218_180 0.0721850345 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
12 Hb_002357_070 0.0725822473 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_000787_200 0.0742746432 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005489_040 0.0744916602 - - PREDICTED: cullin-1 [Jatropha curcas]
15 Hb_000173_190 0.0749964367 - - conserved hypothetical protein [Ricinus communis]
16 Hb_048476_080 0.0757027102 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
17 Hb_003680_020 0.0769369413 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000976_110 0.0783552146 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
19 Hb_001141_240 0.0784655917 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
20 Hb_000009_030 0.079666485 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_170 Hb_000270_170 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_000960_080--Hb_001507_050 Hb_003680_020 Hb_003680_020 Hb_000960_080--Hb_003680_020 Hb_000960_080--Hb_000318_150 Hb_000059_240 Hb_000059_240 Hb_000960_080--Hb_000059_240 Hb_033312_130 Hb_033312_130 Hb_000960_080--Hb_033312_130 Hb_001507_050--Hb_003680_020 Hb_048476_080 Hb_048476_080 Hb_001507_050--Hb_048476_080 Hb_008165_020 Hb_008165_020 Hb_001507_050--Hb_008165_020 Hb_160608_010 Hb_160608_010 Hb_001507_050--Hb_160608_010 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_000787_200 Hb_000787_200 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_011674_040--Hb_000318_150 Hb_011674_040--Hb_000960_080 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000318_150--Hb_000787_200 Hb_000318_150--Hb_000059_240 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_004324_360 Hb_004324_360 Hb_001488_020--Hb_004324_360 Hb_001817_170 Hb_001817_170 Hb_001488_020--Hb_001817_170 Hb_001488_020--Hb_006100_020 Hb_003758_010 Hb_003758_010 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.21387 16.8552 16.984 14.049 7.31645 6.84131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.50823 9.17115 7.96409 20.5071 22.4003

CAGE analysis