Hb_011674_040

Information

Type -
Description -
Location Contig11674: 44869-54508
Sequence    

Annotation

kegg
ID rcu:RCOM_0487950
description 3'-5' exonuclease, putative
nr
ID XP_012089858.1
description PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
swissprot
ID Q10146
description Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
trembl
ID B9SDW9
description 3'-5' exonuclease, putative OS=Ricinus communis GN=RCOM_0487950 PE=4 SV=1
Gene Ontology
ID GO:0005622
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05205: 45123-49974 , PASA_asmbl_05206: 50038-52334 , PASA_asmbl_05207: 52873-53856 , PASA_asmbl_05208: 53937-54492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011674_040 0.0 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
2 Hb_000976_110 0.0542921433 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
3 Hb_000270_170 0.0635448714 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
4 Hb_000787_200 0.0644199043 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_003636_080 0.0692772009 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
6 Hb_000318_150 0.0700080558 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_000960_080 0.0730953003 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
8 Hb_002126_030 0.0769099513 - - ferrochelatase, putative [Ricinus communis]
9 Hb_000173_190 0.0778060727 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000009_030 0.0800976963 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
11 Hb_001141_240 0.0804064809 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
12 Hb_001507_050 0.0815818634 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000109_260 0.0819700069 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
14 Hb_000342_050 0.0827835016 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
15 Hb_028960_030 0.0861721148 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
16 Hb_005489_040 0.0869709075 - - PREDICTED: cullin-1 [Jatropha curcas]
17 Hb_006100_020 0.08861755 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_004218_180 0.0895199932 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
19 Hb_001300_280 0.0896009211 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
20 Hb_003680_020 0.0917178591 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011674_040 Hb_011674_040 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_000787_200 Hb_000787_200 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_000318_150 Hb_000318_150 Hb_011674_040--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_011674_040--Hb_000960_080 Hb_000109_260 Hb_000109_260 Hb_000976_110--Hb_000109_260 Hb_000009_030 Hb_000009_030 Hb_000976_110--Hb_000009_030 Hb_003490_060 Hb_003490_060 Hb_000976_110--Hb_003490_060 Hb_000976_110--Hb_000318_150 Hb_000976_110--Hb_000787_200 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_000787_200--Hb_000318_150 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000787_200--Hb_000270_170 Hb_001300_280 Hb_001300_280 Hb_003636_080--Hb_001300_280 Hb_006468_010 Hb_006468_010 Hb_003636_080--Hb_006468_010 Hb_000173_190 Hb_000173_190 Hb_003636_080--Hb_000173_190 Hb_003636_080--Hb_000318_150 Hb_003636_080--Hb_000787_200 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000173_190 Hb_000960_080--Hb_001507_050 Hb_003680_020 Hb_003680_020 Hb_000960_080--Hb_003680_020 Hb_000960_080--Hb_000059_240 Hb_033312_130 Hb_033312_130 Hb_000960_080--Hb_033312_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40516 3.81448 4.76523 3.47306 1.55564 1.79014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88761 2.28955 1.28231 5.23089 4.86296

CAGE analysis