Hb_003490_060

Information

Type -
Description -
Location Contig3490: 102877-107026
Sequence    

Annotation

kegg
ID mdm:103438333
description probable cyclic nucleotide-gated ion channel 20, chloroplastic
nr
ID XP_011072038.1
description PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
swissprot
ID O89047
description Potassium voltage-gated channel subfamily H member 3 OS=Rattus norvegicus GN=Kcnh3 PE=2 SV=1
trembl
ID K7LED7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36329: 56119-107017 , PASA_asmbl_36330: 56119-107017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003490_060 0.0 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
2 Hb_002828_060 0.0539165319 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
3 Hb_106890_010 0.0628810886 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_000976_110 0.0630974157 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
5 Hb_002392_020 0.0675393201 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
6 Hb_000109_260 0.0698649869 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
7 Hb_003355_010 0.0803870178 - - Heat shock 70 kDa protein, putative [Ricinus communis]
8 Hb_000510_190 0.0845641194 - - glutathione reductase [Hevea brasiliensis]
9 Hb_000358_210 0.0847997372 - - oligosaccharyl transferase, putative [Ricinus communis]
10 Hb_000027_200 0.0850616665 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
11 Hb_001504_060 0.08520544 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
12 Hb_068079_010 0.0863170775 - - -
13 Hb_003490_050 0.0866377002 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
14 Hb_005854_040 0.088266639 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000862_100 0.0907047579 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
16 Hb_002249_080 0.091713001 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
17 Hb_015884_020 0.0926748286 - - PREDICTED: protein PIR [Jatropha curcas]
18 Hb_002687_200 0.0931464237 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007741_120 0.0943585472 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
20 Hb_005571_010 0.0945325309 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003490_060 Hb_003490_060 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_011674_040 Hb_011674_040 Hb_000976_110--Hb_011674_040 Hb_000976_110--Hb_000109_260 Hb_000009_030 Hb_000009_030 Hb_000976_110--Hb_000009_030 Hb_000318_150 Hb_000318_150 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_000109_260--Hb_011674_040 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050 Hb_003355_010--Hb_030736_040 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_007741_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9357 19.2613 36.2258 30.2334 11.4046 11.7944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7481 8.2565 7.99758 33.4092 45.4824

CAGE analysis