Hb_019654_020

Information

Type -
Description -
Location Contig19654: 8849-14794
Sequence    

Annotation

kegg
ID cit:102628718
description T-complex protein 1 subunit beta-like
nr
ID XP_012073695.1
description PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
swissprot
ID Q940P8
description T-complex protein 1 subunit beta OS=Arabidopsis thaliana GN=CCT2 PE=1 SV=1
trembl
ID A0A067KYC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08140 PE=3 SV=1
Gene Ontology
ID GO:0005618
description t-complex protein 1 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19694: 8877-14827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_020 0.0 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
2 Hb_000367_180 0.0525095487 - - Heparanase-2, putative [Ricinus communis]
3 Hb_000007_060 0.062831016 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
4 Hb_015884_020 0.0674908688 - - PREDICTED: protein PIR [Jatropha curcas]
5 Hb_000979_130 0.0717989159 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
6 Hb_000585_110 0.0731062394 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
7 Hb_003058_100 0.0745902573 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
8 Hb_106890_010 0.0746355356 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_000007_090 0.0775865546 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
10 Hb_002552_040 0.0792831529 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
11 Hb_065968_010 0.0792840659 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
12 Hb_002687_200 0.0797341957 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003680_220 0.0801628785 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
14 Hb_000815_300 0.0816356954 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_006970_020 0.0820621034 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
16 Hb_000395_280 0.0829175018 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
17 Hb_003355_010 0.0844365264 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_008725_270 0.08572454 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
19 Hb_005694_060 0.0857310486 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
20 Hb_003605_020 0.0858027137 - - exocyst complex component sec6, putative [Ricinus communis]

Gene co-expression network

sample Hb_019654_020 Hb_019654_020 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_000367_180--Hb_000007_060 Hb_000367_180--Hb_000979_130 Hb_065968_010 Hb_065968_010 Hb_000367_180--Hb_065968_010 Hb_000367_180--Hb_015884_020 Hb_000260_510 Hb_000260_510 Hb_000367_180--Hb_000260_510 Hb_000007_060--Hb_015884_020 Hb_000007_060--Hb_000260_510 Hb_106890_010 Hb_106890_010 Hb_000007_060--Hb_106890_010 Hb_000007_060--Hb_000979_130 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_000979_130--Hb_005694_060 Hb_000979_130--Hb_000260_510 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_002837_040 Hb_002837_040 Hb_003058_100--Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.21214 6.67306 21.9416 25.2168 7.55083 6.81203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56167 7.07891 8.05261 17.6599 24.3831

CAGE analysis