Hb_000585_110

Information

Type -
Description -
Location Contig585: 206600-214162
Sequence    

Annotation

kegg
ID rcu:RCOM_0364660
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012081870.1
description PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
swissprot
ID Q9SA22
description Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1
trembl
ID A0A067K379
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19236 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49965: 206613-214151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000585_110 0.0 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
2 Hb_055690_010 0.0594954651 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
3 Hb_002249_080 0.0649091451 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
4 Hb_000007_090 0.0656117127 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
5 Hb_007441_310 0.069059941 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
6 Hb_019654_020 0.0731062394 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
7 Hb_000417_390 0.0759133746 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
8 Hb_005694_060 0.0778794886 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
9 Hb_030736_040 0.0785874915 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
10 Hb_003355_010 0.080979455 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_106890_010 0.0810264216 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_000979_130 0.0816740267 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
13 Hb_008375_010 0.0818404167 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
14 Hb_015884_020 0.0835505956 - - PREDICTED: protein PIR [Jatropha curcas]
15 Hb_001117_110 0.0835549177 - - PREDICTED: dynamin-2A [Jatropha curcas]
16 Hb_000116_250 0.0857285982 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
17 Hb_032631_070 0.0871062752 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
18 Hb_003875_030 0.0895473675 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
19 Hb_006970_020 0.0912324046 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
20 Hb_000367_180 0.0934409853 - - Heparanase-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000585_110 Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_002249_080--Hb_002828_060 Hb_000510_190 Hb_000510_190 Hb_002249_080--Hb_000510_190 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_000007_090--Hb_019654_020 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_001080_300 Hb_001080_300 Hb_000417_390--Hb_001080_300 Hb_001029_040 Hb_001029_040 Hb_000417_390--Hb_001029_040 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60074 8.47112 22.1066 25.3975 4.9067 7.52398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56924 8.10917 8.3667 14.4855 30.3262

CAGE analysis