Hb_000007_090

Information

Type -
Description -
Location Contig7: 98450-107730
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11300g
description POPTRDRAFT_1084995; hypothetical protein
nr
ID XP_012080498.1
description PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
swissprot
ID Q8W4Y5
description ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067K8T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11809 PE=4 SV=1
Gene Ontology
ID GO:0005789
description asc1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54730: 98492-107801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_090 0.0 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
2 Hb_000585_110 0.0656117127 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
3 Hb_002687_200 0.0718084069 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003680_220 0.0724438253 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
5 Hb_002249_080 0.0758872324 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
6 Hb_008725_270 0.0761656897 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
7 Hb_019654_020 0.0775865546 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
8 Hb_001882_010 0.0786749059 - - -
9 Hb_000815_300 0.0799135003 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_000375_300 0.0801946858 - - PREDICTED: cyanate hydratase [Jatropha curcas]
11 Hb_116349_120 0.0821199486 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000270_480 0.0849121045 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
13 Hb_002193_060 0.0864940644 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
14 Hb_000665_170 0.0871833711 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_068079_010 0.0876345817 - - -
16 Hb_000510_170 0.0886911478 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
17 Hb_000116_250 0.0906199018 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
18 Hb_000057_110 0.090976244 - - PREDICTED: kinesin-13A [Jatropha curcas]
19 Hb_002740_080 0.0913652844 - - flap endonuclease-1, putative [Ricinus communis]
20 Hb_003777_030 0.0918614893 - - Exocyst complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_090 Hb_000007_090 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_019654_020 Hb_019654_020 Hb_000007_090--Hb_019654_020 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_000585_110--Hb_002249_080 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_003680_220--Hb_008725_270 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_002249_080--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_002249_080--Hb_002828_060 Hb_000510_190 Hb_000510_190 Hb_002249_080--Hb_000510_190 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_008725_270--Hb_000926_060 Hb_008725_270--Hb_000500_220 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35434 4.85593 12.3976 13.435 2.48615 3.41549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.802 4.44608 3.33058 6.68703 12.2461

CAGE analysis