Hb_003680_220

Information

Type -
Description -
Location Contig3680: 231239-241613
Sequence    

Annotation

kegg
ID csv:101207102
description pyruvate kinase, cytosolic isozyme-like
nr
ID KJB16690.1
description hypothetical protein B456_002G243700 [Gossypium raimondii]
swissprot
ID Q42806
description Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1
trembl
ID A0A0D2RBY9
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G243700 PE=4 SV=1
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37849: 231238-240917 , PASA_asmbl_37850: 231238-241087 , PASA_asmbl_37851: 239480-240915
cDNA
(Sanger)
(ID:Location)		 025_G11.ab1: 239480-240915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_220 0.0 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
2 Hb_008725_270 0.0445905429 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
3 Hb_002687_200 0.0628231285 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000926_060 0.0679754144 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000500_220 0.0704381204 - - PREDICTED: intersectin-1 [Jatropha curcas]
6 Hb_009296_020 0.0712942067 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
7 Hb_000007_090 0.0724438253 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
8 Hb_070624_010 0.0743131332 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
9 Hb_019654_020 0.0801628785 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
10 Hb_002627_040 0.0888788789 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
11 Hb_000029_400 0.0921573814 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
12 Hb_000116_250 0.0931306622 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
13 Hb_002249_080 0.0940622332 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
14 Hb_000585_110 0.0942074485 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
15 Hb_002942_230 0.0953231163 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
16 Hb_002552_040 0.095490128 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_006438_020 0.1008211907 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
18 Hb_000645_180 0.1011541989 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
19 Hb_015884_020 0.1012278921 - - PREDICTED: protein PIR [Jatropha curcas]
20 Hb_000260_400 0.1015743485 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]

Gene co-expression network

sample Hb_003680_220 Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_008725_270--Hb_000926_060 Hb_008725_270--Hb_000500_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_000926_060--Hb_000500_220 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_000500_220--Hb_002687_200 Hb_011671_120 Hb_011671_120 Hb_000500_220--Hb_011671_120 Hb_000500_220--Hb_009296_020 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_019654_020 Hb_019654_020 Hb_000007_090--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4139 28.5194 93.943 79.1632 17.3342 17.7749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4732 18.939 19.4607 54.3957 72.0197

CAGE analysis