Hb_002687_200

Information

Type -
Description -
Location Contig2687: 212646-226131
Sequence    

Annotation

kegg
ID rcu:RCOM_1454190
description hypothetical protein
nr
ID XP_002513138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28089: 213137-225075 , PASA_asmbl_28090: 220673-221000 , PASA_asmbl_28091: 226075-226307 , PASA_asmbl_28092: 225362-226404
cDNA
(Sanger)
(ID:Location)		 006_N13r.ab1: 207499-212819

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003680_220 0.0628231285 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
3 Hb_015884_020 0.0692507019 - - PREDICTED: protein PIR [Jatropha curcas]
4 Hb_000007_090 0.0718084069 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
5 Hb_000027_200 0.0724268983 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_002552_040 0.0778746537 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
7 Hb_002942_230 0.0782213614 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
8 Hb_003777_030 0.0783938612 - - Exocyst complex component, putative [Ricinus communis]
9 Hb_008725_270 0.0788391762 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
10 Hb_000665_170 0.0793485149 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_002639_030 0.0793781857 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
12 Hb_000418_020 0.0794728317 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
13 Hb_019654_020 0.0797341957 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
14 Hb_005854_040 0.0807845102 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002249_080 0.0814471298 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
16 Hb_116349_120 0.0841952719 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000367_180 0.0884544056 - - Heparanase-2, putative [Ricinus communis]
18 Hb_000815_300 0.0885795725 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_002301_030 0.0891919787 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_001159_060 0.0895195915 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_002687_200 Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_008725_270 Hb_008725_270 Hb_003680_220--Hb_008725_270 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_003680_220--Hb_000007_090 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_000007_090--Hb_008725_270 Hb_000007_090--Hb_019654_020 Hb_005854_040 Hb_005854_040 Hb_000027_200--Hb_005854_040 Hb_000027_200--Hb_015884_020 Hb_021977_010 Hb_021977_010 Hb_000027_200--Hb_021977_010 Hb_001159_060 Hb_001159_060 Hb_000027_200--Hb_001159_060 Hb_000976_110 Hb_000976_110 Hb_000027_200--Hb_000976_110 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_002552_040--Hb_006970_020 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_001411_130 Hb_001411_130 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07026 4.34406 8.85568 10.6633 2.25376 2.7477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58359 2.21039 2.09792 6.76706 8.33459

CAGE analysis