Hb_000866_070

Information

Type -
Description -
Location Contig866: 49693-55945
Sequence    

Annotation

kegg
ID tcc:TCM_005319
description SKP1-like protein 21 isoform 1
nr
ID XP_012083375.1
description PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
swissprot
ID Q8LF97
description SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1
trembl
ID A0A061DU64
description SKP1-like protein 21 isoform 2 OS=Theobroma cacao GN=TCM_005319 PE=4 SV=1
Gene Ontology
ID GO:0016874
description skp1-like protein 21 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60930: 49850-56084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
2 Hb_000001_090 0.0496613201 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
3 Hb_002942_230 0.0670993709 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
4 Hb_029584_120 0.0871457741 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
5 Hb_000968_060 0.0952674748 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
6 Hb_001411_130 0.0987145356 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
7 Hb_002217_080 0.0991472062 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
8 Hb_006588_160 0.0998168968 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002488_010 0.1013393316 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
10 Hb_002900_150 0.1028785509 - - PREDICTED: syntaxin-81 [Jatropha curcas]
11 Hb_164010_050 0.1033693879 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
12 Hb_001279_020 0.1047064473 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
13 Hb_002045_170 0.1069392402 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
14 Hb_001053_080 0.1083165194 - - OsCesA3 protein [Morus notabilis]
15 Hb_003687_080 0.1084382718 - - PREDICTED: casein kinase I-like [Jatropha curcas]
16 Hb_001140_180 0.1095852456 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
17 Hb_004724_390 0.1109175582 - - PREDICTED: nicalin-1-like [Populus euphratica]
18 Hb_000562_100 0.1116514999 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
19 Hb_000959_300 0.1121014757 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
20 Hb_074399_010 0.1125987568 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000866_070 Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000866_070--Hb_000001_090 Hb_002942_230 Hb_002942_230 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000968_060 Hb_000968_060 Hb_000866_070--Hb_000968_060 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_002217_080 Hb_002217_080 Hb_000866_070--Hb_002217_080 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_002942_230--Hb_002217_080 Hb_002942_230--Hb_001411_130 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_000258_220 Hb_000258_220 Hb_029584_120--Hb_000258_220 Hb_029584_120--Hb_074399_010 Hb_004724_390 Hb_004724_390 Hb_029584_120--Hb_004724_390 Hb_029584_120--Hb_002942_230 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_001411_130--Hb_002217_080 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020 Hb_000418_020 Hb_000418_020 Hb_002217_080--Hb_000418_020 Hb_002217_080--Hb_002687_200 Hb_000622_330 Hb_000622_330 Hb_002217_080--Hb_000622_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20339 2.25964 5.75376 5.81515 1.82945 1.96607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614114 0.859025 0.542891 2.37111 3.97043

CAGE analysis