Hb_006588_160

Information

Type -
Description -
Location Contig6588: 98688-104630
Sequence    

Annotation

kegg
ID rcu:RCOM_0085190
description carboxyl-tansferase, subunit of Het-ACCase (EC:6.4.1.2)
nr
ID XP_012087928.1
description PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9LD43
description Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1
trembl
ID A0A067JWV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25059 PE=3 SV=1
Gene Ontology
ID GO:0009317
description acetyl co-enzyme a carboxylase carboxyltransferase alpha subunit family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52884: 98753-99772 , PASA_asmbl_52885: 99827-100608
cDNA
(Sanger)
(ID:Location)		 018_H17.ab1: 99827-100608

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_160 0.0 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000154_050 0.0721608378 - - CMP-sialic acid transporter, putative [Ricinus communis]
3 Hb_004013_030 0.0732176868 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
4 Hb_000001_090 0.074002964 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
5 Hb_001053_080 0.0844017698 - - OsCesA3 protein [Morus notabilis]
6 Hb_002837_040 0.0846131421 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001450_020 0.0881853433 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
8 Hb_001279_020 0.0900328613 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
9 Hb_000634_020 0.096351308 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
10 Hb_001519_040 0.0972740274 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
11 Hb_001279_090 0.0978098749 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
12 Hb_000258_220 0.0987438667 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
13 Hb_000866_070 0.0998168968 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
14 Hb_000503_020 0.1012015911 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
15 Hb_016448_010 0.1014907488 - - Protein MYG1, putative [Ricinus communis]
16 Hb_074399_010 0.1047284127 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
17 Hb_000645_070 0.1051076041 - - aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_004032_370 0.1063761513 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
19 Hb_000645_180 0.1067644044 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
20 Hb_029584_120 0.1071568003 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_160 Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_006588_160--Hb_000154_050 Hb_004013_030 Hb_004013_030 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_002837_040 Hb_002837_040 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_004013_030 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_006816_190 Hb_006816_190 Hb_004013_030--Hb_006816_190 Hb_004013_030--Hb_001450_020 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_000866_070 Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_029584_120 Hb_029584_120 Hb_000001_090--Hb_029584_120 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_000001_090--Hb_074399_010 Hb_001279_090 Hb_001279_090 Hb_001053_080--Hb_001279_090 Hb_001279_020 Hb_001279_020 Hb_001053_080--Hb_001279_020 Hb_001140_180 Hb_001140_180 Hb_001053_080--Hb_001140_180 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_002749_080 Hb_002749_080 Hb_002837_040--Hb_002749_080 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_001450_020--Hb_000154_050 Hb_000497_190 Hb_000497_190 Hb_001450_020--Hb_000497_190 Hb_004032_370 Hb_004032_370 Hb_001450_020--Hb_004032_370 Hb_001450_020--Hb_001279_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9634 12.1067 39.7862 33.219 13.4758 12.8666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.05375 4.45935 6.87104 16.0737 25.0597

CAGE analysis