Hb_000903_010

Information

Type -
Description -
Location Contig903: 6903-20837
Sequence    

Annotation

kegg
ID cit:102628340
description prolyl 4-hydroxylase subunit alpha-1-like
nr
ID KDP42883.1
description hypothetical protein JCGZ_23825 [Jatropha curcas]
swissprot
ID Q9ZW86
description Prolyl 4-hydroxylase 1 OS=Arabidopsis thaliana GN=P4H1 PE=1 SV=1
trembl
ID A0A067L6M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23825 PE=4 SV=1
Gene Ontology
ID GO:0005506
description prolyl 4-hydroxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000903_010 0.0 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
2 Hb_002837_040 0.0767793366 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_004064_040 0.0774292469 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
4 Hb_002871_140 0.0808988111 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
5 Hb_000787_060 0.0819963595 - - thioredoxin domain-containing protein, putative [Ricinus communis]
6 Hb_002749_080 0.0829695741 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001002_060 0.0840313708 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
8 Hb_000160_070 0.0842918736 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
9 Hb_000261_210 0.0858824488 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000101_080 0.0884782624 - - PREDICTED: protein CREG1 [Jatropha curcas]
11 Hb_005064_010 0.0902130863 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
12 Hb_014361_060 0.0911694108 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
13 Hb_000184_070 0.0922145021 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
14 Hb_001227_120 0.0925378887 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
15 Hb_002774_190 0.0932785964 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
16 Hb_001242_120 0.0936524158 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
17 Hb_030982_010 0.0950036428 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001677_200 0.0951409465 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000645_070 0.0951528381 - - aldehyde dehydrogenase, putative [Ricinus communis]
20 Hb_032202_220 0.0962352112 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000903_010 Hb_000903_010 Hb_002837_040 Hb_002837_040 Hb_000903_010--Hb_002837_040 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_002871_140 Hb_002871_140 Hb_000903_010--Hb_002871_140 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_002749_080 Hb_002749_080 Hb_000903_010--Hb_002749_080 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_002837_040--Hb_002749_080 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_005064_010 Hb_005064_010 Hb_004064_040--Hb_005064_010 Hb_000836_300 Hb_000836_300 Hb_004064_040--Hb_000836_300 Hb_000160_070 Hb_000160_070 Hb_004064_040--Hb_000160_070 Hb_000056_160 Hb_000056_160 Hb_004064_040--Hb_000056_160 Hb_001227_120 Hb_001227_120 Hb_004064_040--Hb_001227_120 Hb_002871_140--Hb_000154_050 Hb_002871_140--Hb_002749_080 Hb_002871_140--Hb_005064_010 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000787_060--Hb_002749_080 Hb_000007_390 Hb_000007_390 Hb_000787_060--Hb_000007_390 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_002749_080--Hb_000056_160 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83389 4.10237 10.9689 12.9802 7.71025 5.77919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58754 4.4742 3.11422 7.99316 10.548

CAGE analysis