Hb_004064_040

Information

Type -
Description -
Location Contig4064: 72613-78713
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04670g
description POPTRDRAFT_733107; hypothetical protein
nr
ID XP_012086278.1
description PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
swissprot
ID O35075
description Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1
trembl
ID B9IED2
description Vacuolar protein sorting-associated protein 26 OS=Populus trichocarpa GN=POPTR_0015s04670g PE=4 SV=1
Gene Ontology
ID GO:0048573
description down syndrome critical region protein 3 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40314: 72882-77184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004064_040 0.0 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
2 Hb_005064_010 0.0458131604 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
3 Hb_000836_300 0.0766553374 - - caax prenyl protease ste24, putative [Ricinus communis]
4 Hb_000903_010 0.0774292469 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
5 Hb_000160_070 0.081585972 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
6 Hb_000056_160 0.0817426119 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
7 Hb_001227_120 0.0825277475 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
8 Hb_000622_110 0.0869578782 - - cmp-sialic acid transporter, putative [Ricinus communis]
9 Hb_001677_200 0.0870545899 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000154_050 0.0872743215 - - CMP-sialic acid transporter, putative [Ricinus communis]
11 Hb_000261_210 0.0880827092 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_001002_060 0.0893730997 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
13 Hb_030982_010 0.0933822457 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023313_040 0.0946905933 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
15 Hb_004228_120 0.0966194201 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
16 Hb_086639_080 0.0974818551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002871_140 0.0975809742 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
18 Hb_000054_040 0.0979187006 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
19 Hb_000579_070 0.0984748783 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
20 Hb_003540_050 0.0986750476 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_004064_040 Hb_004064_040 Hb_005064_010 Hb_005064_010 Hb_004064_040--Hb_005064_010 Hb_000836_300 Hb_000836_300 Hb_004064_040--Hb_000836_300 Hb_000903_010 Hb_000903_010 Hb_004064_040--Hb_000903_010 Hb_000160_070 Hb_000160_070 Hb_004064_040--Hb_000160_070 Hb_000056_160 Hb_000056_160 Hb_004064_040--Hb_000056_160 Hb_001227_120 Hb_001227_120 Hb_004064_040--Hb_001227_120 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_005064_010--Hb_000160_070 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_164945_010 Hb_164945_010 Hb_000836_300--Hb_164945_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_004228_120 Hb_004228_120 Hb_000836_300--Hb_004228_120 Hb_002837_040 Hb_002837_040 Hb_000903_010--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000903_010--Hb_002871_140 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_002749_080 Hb_002749_080 Hb_000903_010--Hb_002749_080 Hb_000903_010--Hb_001002_060 Hb_002740_080 Hb_002740_080 Hb_000160_070--Hb_002740_080 Hb_001677_200 Hb_001677_200 Hb_000160_070--Hb_001677_200 Hb_000160_070--Hb_001227_120 Hb_000160_070--Hb_000903_010 Hb_000579_070 Hb_000579_070 Hb_000056_160--Hb_000579_070 Hb_003687_210 Hb_003687_210 Hb_000056_160--Hb_003687_210 Hb_000261_210 Hb_000261_210 Hb_000056_160--Hb_000261_210 Hb_000056_160--Hb_000154_050 Hb_000056_160--Hb_001002_060 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001279_190 Hb_001279_190 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58408 2.32221 6.76369 8.46605 3.66298 3.74694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14359 2.54372 1.44201 4.50371 3.80418

CAGE analysis