Hb_005064_010

Information

Type -
Description -
Location Contig5064: 34878-51045
Sequence    

Annotation

kegg
ID rcu:RCOM_0640900
description hypothetical protein
nr
ID XP_012090025.1
description PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
swissprot
ID Q9LK31
description Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=2 SV=1
trembl
ID A0A067L9D9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01532 PE=4 SV=1
Gene Ontology
ID GO:0005768
description kelch repeat-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46149: 34951-51060 , PASA_asmbl_46150: 46580-47214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005064_010 0.0 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
2 Hb_004064_040 0.0458131604 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
3 Hb_000154_050 0.0671950515 - - CMP-sialic acid transporter, putative [Ricinus communis]
4 Hb_001002_060 0.0728726717 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
5 Hb_001227_120 0.0781827794 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
6 Hb_003540_050 0.0793353657 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
7 Hb_000160_070 0.0818087935 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
8 Hb_001677_200 0.085071923 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000072_300 0.0857378688 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
10 Hb_023313_040 0.0866840885 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
11 Hb_002871_140 0.0872231811 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
12 Hb_000836_300 0.0893788428 - - caax prenyl protease ste24, putative [Ricinus communis]
13 Hb_000903_010 0.0902130863 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
14 Hb_000056_160 0.0907770594 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
15 Hb_000261_210 0.0912200059 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_030982_010 0.0918627331 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002686_080 0.0952223745 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
18 Hb_016347_020 0.095406427 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
19 Hb_004096_060 0.0955465824 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
20 Hb_002740_080 0.0966640027 - - flap endonuclease-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005064_010 Hb_005064_010 Hb_004064_040 Hb_004064_040 Hb_005064_010--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_001227_120 Hb_001227_120 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_000160_070 Hb_000160_070 Hb_005064_010--Hb_000160_070 Hb_000836_300 Hb_000836_300 Hb_004064_040--Hb_000836_300 Hb_000903_010 Hb_000903_010 Hb_004064_040--Hb_000903_010 Hb_004064_040--Hb_000160_070 Hb_000056_160 Hb_000056_160 Hb_004064_040--Hb_000056_160 Hb_004064_040--Hb_001227_120 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001279_190 Hb_001279_190 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_000160_070--Hb_002740_080 Hb_001677_200 Hb_001677_200 Hb_000160_070--Hb_001677_200 Hb_000160_070--Hb_001227_120 Hb_000160_070--Hb_000903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30645 7.70581 21.5438 22.6857 9.33084 11.0954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89958 6.81658 4.40724 10.4537 11.186

CAGE analysis