Hb_000072_300

Information

Type -
Description -
Location Contig72: 430568-432908
Sequence    

Annotation

kegg
ID rcu:RCOM_0876620
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012088081.1
description PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
swissprot
ID Q9FWA4
description Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1
trembl
ID A0A067JXP5
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_25605 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55611: 430571-432573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_300 0.0 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
2 Hb_003540_050 0.0610008714 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
3 Hb_002740_080 0.0733973493 - - flap endonuclease-1, putative [Ricinus communis]
4 Hb_000359_290 0.0836389595 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
5 Hb_002686_080 0.0853430257 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
6 Hb_005064_010 0.0857378688 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
7 Hb_000152_600 0.0865047172 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
8 Hb_000395_280 0.0869932288 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
9 Hb_000796_150 0.0904358994 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
10 Hb_000197_020 0.0909996043 - - PREDICTED: protein RER1A [Jatropha curcas]
11 Hb_001633_200 0.0930017198 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
12 Hb_001227_120 0.0933622964 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
13 Hb_001053_190 0.0948211333 - - ADP,ATP carrier protein, putative [Ricinus communis]
14 Hb_000665_170 0.0966089724 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_011310_110 0.096963751 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
16 Hb_000160_070 0.0970300791 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
17 Hb_081599_010 0.0975989727 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010672_020 0.0978699728 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
19 Hb_005754_040 0.0979674151 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
20 Hb_000705_230 0.0980218879 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_300 Hb_000072_300 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_002740_080 Hb_002740_080 Hb_000072_300--Hb_002740_080 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_003540_050--Hb_002686_080 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_003540_050--Hb_002740_080 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_002740_080--Hb_001279_190 Hb_000160_070 Hb_000160_070 Hb_002740_080--Hb_000160_070 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_002740_080--Hb_001227_120 Hb_000796_150 Hb_000796_150 Hb_000359_290--Hb_000796_150 Hb_000140_340 Hb_000140_340 Hb_000359_290--Hb_000140_340 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110 Hb_002686_080--Hb_001053_190 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_004064_040 Hb_004064_040 Hb_005064_010--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_005064_010--Hb_001227_120 Hb_005064_010--Hb_000160_070 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_019181_030 Hb_019181_030 Hb_000152_600--Hb_019181_030 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65607 4.82967 16.2579 17.5091 4.0985 5.67733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99355 5.52195 5.03471 6.25247 8.86541

CAGE analysis