Hb_016448_010

Information

Type -
Description -
Location Contig16448: 33862-37090
Sequence    

Annotation

kegg
ID rcu:RCOM_1313110
description Protein MYG1, putative
nr
ID XP_002518897.1
description Protein MYG1, putative [Ricinus communis]
swissprot
ID Q55G91
description UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1
trembl
ID B9RYS8
description Protein MYG1, putative OS=Ricinus communis GN=RCOM_1313110 PE=4 SV=1
Gene Ontology
ID GO:0005739
description upf0160 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15115: 33838-37071
cDNA
(Sanger)
(ID:Location)		 005_C22.ab1: 33836-35577

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016448_010 0.0 - - Protein MYG1, putative [Ricinus communis]
2 Hb_003506_030 0.0697396722 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_021596_020 0.0738181069 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
4 Hb_012438_030 0.0755172181 - - PREDICTED: protein sym-1 [Jatropha curcas]
5 Hb_001504_010 0.0758231462 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
6 Hb_000098_240 0.0772466693 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
7 Hb_026234_010 0.0804676512 - - choline monooxygenase, putative [Ricinus communis]
8 Hb_002686_080 0.081136307 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
9 Hb_000163_260 0.0812099737 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
10 Hb_001824_030 0.0820234813 - - plant sec1, putative [Ricinus communis]
11 Hb_001053_190 0.0830963778 - - ADP,ATP carrier protein, putative [Ricinus communis]
12 Hb_005649_100 0.0837749202 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_000086_270 0.0862230329 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
14 Hb_002249_020 0.086789 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
15 Hb_001623_490 0.0868499824 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
16 Hb_087313_010 0.0879766895 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003228_100 0.0902795706 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
18 Hb_003449_100 0.0906468532 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
19 Hb_000724_020 0.0911417613 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
20 Hb_001703_040 0.0913069631 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_016448_010 Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_021596_020--Hb_001504_010 Hb_002684_020 Hb_002684_020 Hb_021596_020--Hb_002684_020 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_006438_020 Hb_006438_020 Hb_021596_020--Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_021596_020--Hb_012633_050 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_000878_160 Hb_000878_160 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_000098_240--Hb_026234_010 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150 Hb_008387_010 Hb_008387_010 Hb_026234_010--Hb_008387_010 Hb_001519_040 Hb_001519_040 Hb_026234_010--Hb_001519_040 Hb_026234_010--Hb_003506_030 Hb_007413_040 Hb_007413_040 Hb_026234_010--Hb_007413_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3087 14.8252 40.1864 22.9438 10.2175 13.2783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99009 8.76988 7.89675 14.6959 19.5442

CAGE analysis