Hb_006438_020

Information

Type -
Description -
Location Contig6438: 51026-54390
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09760g
description POPTRDRAFT_262154; hypothetical protein
nr
ID XP_011043941.1
description PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
swissprot
ID Q6F2U9
description Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1
trembl
ID A0A067L4J5
description Lysine--tRNA ligase OS=Jatropha curcas GN=JCGZ_26486 PE=3 SV=1
Gene Ontology
ID GO:0005737
description lysine--trna ligase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52219: 31563-54394 , PASA_asmbl_52220: 51655-54394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006438_020 0.0 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
2 Hb_012633_050 0.0707713695 - - zinc finger protein, putative [Ricinus communis]
3 Hb_002445_030 0.0727336309 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
4 Hb_002687_180 0.074152861 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
5 Hb_011716_010 0.0764210403 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
6 Hb_021596_020 0.0770037922 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
7 Hb_061256_010 0.0787981335 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
8 Hb_000579_080 0.080109445 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
9 Hb_001504_010 0.080849053 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
10 Hb_002304_050 0.0810763619 - - pyruvate kinase, putative [Ricinus communis]
11 Hb_000120_890 0.084123415 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_001799_160 0.0847875385 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000086_270 0.0855730552 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
14 Hb_002684_020 0.0860069641 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_002552_040 0.0887680122 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
16 Hb_000476_060 0.090371723 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_013726_050 0.0923765768 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
18 Hb_003498_100 0.0926794855 - - component of oligomeric golgi complex, putative [Ricinus communis]
19 Hb_001279_190 0.09300612 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
20 Hb_000926_060 0.0942711163 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006438_020 Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_001504_010 Hb_001504_010 Hb_012633_050--Hb_001504_010 Hb_000579_080 Hb_000579_080 Hb_012633_050--Hb_000579_080 Hb_000229_050 Hb_000229_050 Hb_012633_050--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_012633_050--Hb_008206_080 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010 Hb_000173_130 Hb_000173_130 Hb_002445_030--Hb_000173_130 Hb_013726_050 Hb_013726_050 Hb_002445_030--Hb_013726_050 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002445_030--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_011716_010--Hb_001279_190 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_011716_010--Hb_001504_010 Hb_011716_010--Hb_004228_120 Hb_021596_020--Hb_001504_010 Hb_002684_020 Hb_002684_020 Hb_021596_020--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_021596_020--Hb_016448_010 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_021596_020--Hb_012633_050 Hb_000235_070 Hb_000235_070 Hb_061256_010--Hb_000235_070 Hb_001799_160 Hb_001799_160 Hb_061256_010--Hb_001799_160 Hb_000193_260 Hb_000193_260 Hb_061256_010--Hb_000193_260 Hb_001729_020 Hb_001729_020 Hb_061256_010--Hb_001729_020 Hb_021576_150 Hb_021576_150 Hb_061256_010--Hb_021576_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2344 22.1961 50.5773 33.0974 8.34022 11.5162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.018 13.2287 15.3648 24.5873 27.4919

CAGE analysis