Hb_001729_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig1729: 39284-46573
Sequence    

Annotation

kegg
ID rcu:RCOM_0512220
description zinc finger protein, putative
nr
ID XP_002528968.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q94AD9
description Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1
trembl
ID B9SSJ9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0512220 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16400: 39300-46534 , PASA_asmbl_16401: 43630-44923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001729_020 0.0 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
2 Hb_000979_140 0.0705915186 - - kinase family protein [Populus trichocarpa]
3 Hb_002686_150 0.0734803328 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_000711_010 0.08664878 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
5 Hb_002349_030 0.0881875678 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003428_090 0.0905401278 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_002965_050 0.09249667 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
8 Hb_000680_120 0.0949263015 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
9 Hb_061256_010 0.0964767334 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
10 Hb_002900_120 0.0989835165 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
11 Hb_000098_180 0.1019940514 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
12 Hb_060094_010 0.1031889601 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
13 Hb_015778_040 0.1032979013 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
14 Hb_000375_060 0.1041524886 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
15 Hb_000156_090 0.1061810894 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
16 Hb_012762_040 0.1063942718 - - big map kinase/bmk, putative [Ricinus communis]
17 Hb_000137_010 0.1066000438 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
18 Hb_024714_070 0.1070424517 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
19 Hb_000452_030 0.1075372485 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
20 Hb_002304_050 0.1078423837 - - pyruvate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001729_020 Hb_001729_020 Hb_000979_140 Hb_000979_140 Hb_001729_020--Hb_000979_140 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_002686_150--Hb_003428_090 Hb_000156_090 Hb_000156_090 Hb_002686_150--Hb_000156_090 Hb_002686_150--Hb_002965_050 Hb_026198_010 Hb_026198_010 Hb_002686_150--Hb_026198_010 Hb_060094_010 Hb_060094_010 Hb_002686_150--Hb_060094_010 Hb_000711_010--Hb_002349_030 Hb_000711_010--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_000711_010--Hb_002876_210 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_000711_010--Hb_060094_010 Hb_002349_030--Hb_060094_010 Hb_002349_030--Hb_000197_180 Hb_002349_030--Hb_000012_240 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_003428_090--Hb_000156_090 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41706 15.4664 20.0692 14.1852 2.27223 1.99026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8845 5.24245 4.55419 8.91768 10.596

CAGE analysis