Hb_060094_010

Information

Type -
Description -
Location Contig60094: 8564-14619
Sequence    

Annotation

kegg
ID tcc:TCM_030461
description C2 calcium/lipid-binding and GRAM domain containing protein
nr
ID XP_012074818.1
description PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZVT9
description C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4
trembl
ID A0A067KHC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50572: 9042-9265 , PASA_asmbl_50573: 11277-14175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060094_010 0.0 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
2 Hb_115137_010 0.0650666527 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
3 Hb_002965_050 0.0700898743 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
4 Hb_005305_100 0.0713765784 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_003428_090 0.0719709381 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_009372_020 0.0730395554 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_010068_070 0.0811121581 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_002349_030 0.0822363041 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000926_260 0.0826611097 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000956_040 0.083089715 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
11 Hb_008165_020 0.0831828341 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_006468_010 0.0851039485 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
13 Hb_000890_160 0.0853190902 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
14 Hb_000711_010 0.0855656513 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
15 Hb_000960_080 0.0874570798 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
16 Hb_026198_010 0.0901042212 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
17 Hb_001250_050 0.0903897194 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_004375_110 0.0905632473 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
19 Hb_016461_020 0.0905812198 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000197_180 0.0910835814 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_060094_010 Hb_060094_010 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_002965_050 Hb_002965_050 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_006468_010 Hb_006468_010 Hb_115137_010--Hb_006468_010 Hb_001250_050 Hb_001250_050 Hb_115137_010--Hb_001250_050 Hb_115137_010--Hb_005305_100 Hb_000120_810 Hb_000120_810 Hb_115137_010--Hb_000120_810 Hb_115137_010--Hb_003428_090 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_002965_050--Hb_002900_120 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_004375_110 Hb_004375_110 Hb_009372_020--Hb_004375_110 Hb_009372_020--Hb_010068_070 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_010068_070--Hb_000890_160 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_010068_070--Hb_002965_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46085 4.92767 4.70844 4.7545 1.04276 1.57291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61828 1.44799 1.32312 3.42412 3.23285

CAGE analysis