Hb_000111_370

Information

Type -
Description -
Location Contig111: 364728-373104
Sequence    

Annotation

kegg
ID rcu:RCOM_1264700
description Na(+)/H(+) antiporter, putative
nr
ID XP_012068709.1
description PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
swissprot
ID Q9SAK8
description Cation/H(+) antiporter 2 OS=Arabidopsis thaliana GN=CHX2 PE=2 SV=1
trembl
ID A0A067L8X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24558 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03413: 367871-368157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_370 0.0 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
2 Hb_009372_020 0.0751213066 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
3 Hb_033363_010 0.0904445774 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
4 Hb_000015_200 0.0928384065 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
5 Hb_004375_110 0.096530238 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
6 Hb_003964_110 0.1020483764 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
7 Hb_004680_010 0.1032076796 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
8 Hb_000072_020 0.1060581944 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
9 Hb_016734_010 0.1076872521 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
10 Hb_003581_130 0.1084553113 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_000805_190 0.1097848368 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
12 Hb_002387_040 0.1109290632 - - protein transporter, putative [Ricinus communis]
13 Hb_000735_140 0.1113755841 - - 3-glucanase family protein [Populus trichocarpa]
14 Hb_000705_180 0.1116009063 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
15 Hb_004696_070 0.1133629347 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
16 Hb_000227_320 0.1136723185 - - unnamed protein product [Vitis vinifera]
17 Hb_143766_030 0.1148363076 - - protein with unknown function [Ricinus communis]
18 Hb_002686_140 0.1150240465 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
19 Hb_000270_110 0.1151038857 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
20 Hb_010068_070 0.1153079511 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_370 Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_000111_370--Hb_009372_020 Hb_033363_010 Hb_033363_010 Hb_000111_370--Hb_033363_010 Hb_000015_200 Hb_000015_200 Hb_000111_370--Hb_000015_200 Hb_004375_110 Hb_004375_110 Hb_000111_370--Hb_004375_110 Hb_003964_110 Hb_003964_110 Hb_000111_370--Hb_003964_110 Hb_004680_010 Hb_004680_010 Hb_000111_370--Hb_004680_010 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_009372_020--Hb_003964_110 Hb_000072_020 Hb_000072_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_003581_130 Hb_003581_130 Hb_000015_200--Hb_003581_130 Hb_001507_050 Hb_001507_050 Hb_000015_200--Hb_001507_050 Hb_000015_200--Hb_004375_110 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_000452_030 Hb_000452_030 Hb_000015_200--Hb_000452_030 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_004375_110--Hb_008165_020 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_003964_110--Hb_008165_020 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_016734_010 Hb_016734_010 Hb_004680_010--Hb_016734_010 Hb_000735_080 Hb_000735_080 Hb_004680_010--Hb_000735_080 Hb_013726_050 Hb_013726_050 Hb_004680_010--Hb_013726_050 Hb_002304_050 Hb_002304_050 Hb_004680_010--Hb_002304_050 Hb_002445_030 Hb_002445_030 Hb_004680_010--Hb_002445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120478 0.540357 0.362757 0.467751 0.0928345 0.0927142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0368066 0.0796574 0.167195 0.298109 0.279875

CAGE analysis