Hb_000664_090

Information

Type -
Description -
Location Contig664: 207304-213121
Sequence    

Annotation

kegg
ID cic:CICLE_v10007635mg
description hypothetical protein
nr
ID XP_012077385.1
description PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
swissprot
ID P40234
description Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2
trembl
ID A0A067KGP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07739 PE=3 SV=1
Gene Ontology
ID GO:0004672
description casein kinase i protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53140: 207369-213177 , PASA_asmbl_53141: 207672-213177
cDNA
(Sanger)
(ID:Location)		 033_D11.ab1: 212001-213177 , 050_P12.ab1: 212030-213177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000664_090 0.0 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
2 Hb_004375_110 0.0724244114 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
3 Hb_048476_080 0.0741162681 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
4 Hb_008165_020 0.0763707607 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
5 Hb_000015_090 0.0776556371 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
6 Hb_001507_050 0.0788456961 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000844_050 0.0828713137 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
8 Hb_001998_210 0.0851678437 - - unnamed protein product [Coffea canephora]
9 Hb_000331_100 0.0851784971 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
10 Hb_003661_010 0.0863069729 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
11 Hb_001159_060 0.0886627653 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
12 Hb_001414_010 0.0886682018 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
13 Hb_000103_290 0.0904056597 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
14 Hb_021977_010 0.0925030794 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
15 Hb_000300_030 0.0956306389 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
16 Hb_003216_130 0.0964605144 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
17 Hb_000035_100 0.0964612253 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000172_360 0.0980412775 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
19 Hb_001008_130 0.0991869893 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
20 Hb_005305_100 0.099242869 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000664_090 Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000664_090--Hb_004375_110 Hb_048476_080 Hb_048476_080 Hb_000664_090--Hb_048476_080 Hb_008165_020 Hb_008165_020 Hb_000664_090--Hb_008165_020 Hb_000015_090 Hb_000015_090 Hb_000664_090--Hb_000015_090 Hb_001507_050 Hb_001507_050 Hb_000664_090--Hb_001507_050 Hb_000844_050 Hb_000844_050 Hb_000664_090--Hb_000844_050 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_048476_080--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_000452_030 Hb_000452_030 Hb_000015_090--Hb_000452_030 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_090--Hb_000015_200 Hb_000979_140 Hb_000979_140 Hb_000015_090--Hb_000979_140 Hb_000960_080 Hb_000960_080 Hb_001507_050--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_001507_050--Hb_003680_020 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_160608_010 Hb_160608_010 Hb_001507_050--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_000844_050--Hb_003124_270 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_000809_250 Hb_000809_250 Hb_000844_050--Hb_000809_250 Hb_000844_050--Hb_001507_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63564 20.5914 16.345 20.5166 8.3189 4.74907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44367 8.22785 5.0933 12.8632 21.1874

CAGE analysis