Hb_000844_050

Information

Type transcription factor
Description TF Family: B3
Location Contig844: 74530-79137
Sequence    

Annotation

kegg
ID rcu:RCOM_1592590
description hypothetical protein
nr
ID XP_012071730.1
description PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
swissprot
ID Q8S2E6
description B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica GN=Os01g0723500 PE=3 SV=1
trembl
ID A0A067KQC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04341 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein os01g0723500-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60179: 74666-79108 , PASA_asmbl_60180: 76675-76791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
2 Hb_048476_080 0.045800605 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_003124_270 0.0466768786 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
4 Hb_003661_010 0.048972321 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
5 Hb_003680_020 0.0493879166 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000809_250 0.0556522014 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
7 Hb_001507_050 0.0676214337 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000960_080 0.0714525111 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
9 Hb_005181_050 0.0728379548 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
10 Hb_000300_030 0.0730937887 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
11 Hb_008165_020 0.0732510786 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_001998_150 0.0756569421 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
13 Hb_000167_120 0.075766183 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
14 Hb_160608_010 0.0758591554 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
15 Hb_002078_470 0.0762523488 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
16 Hb_001008_130 0.0764821586 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
17 Hb_004586_090 0.0767074916 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
18 Hb_003849_280 0.0770594783 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
19 Hb_009476_120 0.0781045737 - - Clathrin heavy chain 1 [Glycine soja]
20 Hb_007012_040 0.0785200106 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]

Gene co-expression network

sample Hb_000844_050 Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_000844_050--Hb_048476_080 Hb_003124_270 Hb_003124_270 Hb_000844_050--Hb_003124_270 Hb_003661_010 Hb_003661_010 Hb_000844_050--Hb_003661_010 Hb_003680_020 Hb_003680_020 Hb_000844_050--Hb_003680_020 Hb_000809_250 Hb_000809_250 Hb_000844_050--Hb_000809_250 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_003124_270--Hb_000809_250 Hb_003124_270--Hb_003680_020 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_003661_010--Hb_003680_020 Hb_001414_010 Hb_001414_010 Hb_003661_010--Hb_001414_010 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_001507_050 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_000809_250--Hb_003661_010 Hb_000809_250--Hb_005181_050 Hb_001507_050--Hb_000960_080 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_008165_020 Hb_008165_020 Hb_001507_050--Hb_008165_020 Hb_001507_050--Hb_160608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47168 19.3666 12.7892 15.3143 6.23117 5.96213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13292 5.19902 5.86092 13.4089 23.3771

CAGE analysis