Hb_000300_030

Information

Type -
Description -
Location Contig300: 20285-31128
Sequence    

Annotation

kegg
ID rcu:RCOM_0845240
description HIV-1 rev binding protein, hrbl, putative
nr
ID XP_002530953.1
description HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
swissprot
ID Q8RXE7
description Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2
trembl
ID B9SY84
description HIV-1 rev binding protein, hrbl, putative OS=Ricinus communis GN=RCOM_0845240 PE=4 SV=1
Gene Ontology
ID GO:0005096
description hiv-1 rev binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31531: 20068-31136 , PASA_asmbl_31532: 27988-29106 , PASA_asmbl_31533: 29628-30017
cDNA
(Sanger)
(ID:Location)		 052_O18.ab1: 20068-21282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_030 0.0 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
2 Hb_003661_010 0.0520191373 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
3 Hb_005305_100 0.0624005888 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_001541_150 0.0632315398 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001414_010 0.0634333336 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
6 Hb_011457_140 0.0668355265 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
7 Hb_000358_220 0.0682425499 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
8 Hb_048476_080 0.0686082166 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_003680_020 0.0728839529 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000844_050 0.0730937887 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
11 Hb_008165_020 0.0732098887 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_000173_160 0.0752468283 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005305_130 0.0775621427 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
14 Hb_000008_280 0.0777780314 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
15 Hb_021977_010 0.0781658532 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
16 Hb_001507_050 0.0795411525 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001998_210 0.0800185965 - - unnamed protein product [Coffea canephora]
18 Hb_001008_130 0.0802114992 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
19 Hb_160608_010 0.0812018982 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_000960_080 0.0814224019 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_030 Hb_000300_030 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_003661_010--Hb_001414_010 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_004531_100 Hb_004531_100 Hb_001541_150--Hb_004531_100 Hb_006663_060 Hb_006663_060 Hb_001541_150--Hb_006663_060 Hb_000270_190 Hb_000270_190 Hb_001541_150--Hb_000270_190 Hb_022250_010 Hb_022250_010 Hb_001541_150--Hb_022250_010 Hb_000336_020 Hb_000336_020 Hb_001541_150--Hb_000336_020 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_001414_010--Hb_008165_020 Hb_001414_010--Hb_160608_010 Hb_011457_140--Hb_000358_220 Hb_008642_060 Hb_008642_060 Hb_011457_140--Hb_008642_060 Hb_000008_280 Hb_000008_280 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61333 17.8743 15.7503 17.8947 6.05156 6.9234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00034 4.51512 5.11823 11.1178 19.3744

CAGE analysis