Hb_000172_360

Information

Type -
Description -
Location Contig172: 421628-428407
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08230g
description POPTRDRAFT_558581; SAP domain-containing family protein
nr
ID XP_012064637.1
description PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
swissprot
ID Q9UKV3
description Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens GN=ACIN1 PE=1 SV=2
trembl
ID A0A067LQN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24108 PE=4 SV=1
Gene Ontology
ID GO:0006259
description sap domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16153: 421724-428438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_360 0.0 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
2 Hb_003058_140 0.0577527578 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005305_100 0.0643167233 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_000260_760 0.0653257595 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
5 Hb_008165_020 0.0698976495 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_009158_060 0.072865637 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
7 Hb_001159_060 0.0742299127 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
8 Hb_001507_050 0.0748104979 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000034_110 0.0751454005 - - sentrin/sumo-specific protease, putative [Ricinus communis]
10 Hb_009178_010 0.0752982525 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
11 Hb_001414_010 0.0754907465 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_000030_140 0.0760397517 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_005305_130 0.0765719983 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
14 Hb_000976_110 0.077504052 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
15 Hb_143629_020 0.0792282645 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_002686_410 0.0816477762 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
17 Hb_000173_190 0.0821676389 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004718_060 0.0821705586 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_160608_010 0.0822519345 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_013358_060 0.0835992056 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_360 Hb_000172_360 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_005305_100 Hb_005305_100 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_009158_060 Hb_009158_060 Hb_000172_360--Hb_009158_060 Hb_001159_060 Hb_001159_060 Hb_000172_360--Hb_001159_060 Hb_003058_140--Hb_005305_100 Hb_003058_140--Hb_001159_060 Hb_003058_140--Hb_009158_060 Hb_004162_220 Hb_004162_220 Hb_003058_140--Hb_004162_220 Hb_000137_010 Hb_000137_010 Hb_003058_140--Hb_000137_010 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000030_140 Hb_000030_140 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_008165_020--Hb_000428_030 Hb_005305_130 Hb_005305_130 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_000406_210 Hb_000406_210 Hb_001159_060--Hb_000406_210 Hb_000815_300 Hb_000815_300 Hb_001159_060--Hb_000815_300 Hb_000862_100 Hb_000862_100 Hb_001159_060--Hb_000862_100 Hb_001159_060--Hb_005305_130 Hb_001159_060--Hb_009158_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34485 19.3837 22.6906 15.9813 7.60812 8.17568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54266 6.70269 4.19351 15.8733 19.4085

CAGE analysis