Hb_003058_140

Information

Type -
Description -
Location Contig3058: 130567-134691
Sequence    

Annotation

kegg
ID rcu:RCOM_0974660
description hypothetical protein
nr
ID XP_002530836.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXW7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0974660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32324: 133800-134622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000172_360 0.0577527578 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
3 Hb_005305_100 0.0710351088 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_001159_060 0.0777711699 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
5 Hb_009158_060 0.0819216437 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
6 Hb_004162_220 0.082492866 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_000137_010 0.0862325147 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
8 Hb_001504_010 0.0869520457 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_000300_560 0.0879245376 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
10 Hb_033642_120 0.0889614334 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
11 Hb_021596_020 0.0893778195 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
12 Hb_007012_030 0.0894779854 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
13 Hb_001998_210 0.0910640849 - - unnamed protein product [Coffea canephora]
14 Hb_004531_150 0.09148807 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
15 Hb_000173_190 0.0916737711 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000680_120 0.0917562276 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_004718_060 0.0938316055 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_000976_110 0.0938324687 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
19 Hb_000748_090 0.0946874902 - - glucose inhibited division protein A, putative [Ricinus communis]
20 Hb_009178_010 0.0948810289 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_140 Hb_003058_140 Hb_000172_360 Hb_000172_360 Hb_003058_140--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_003058_140--Hb_005305_100 Hb_001159_060 Hb_001159_060 Hb_003058_140--Hb_001159_060 Hb_009158_060 Hb_009158_060 Hb_003058_140--Hb_009158_060 Hb_004162_220 Hb_004162_220 Hb_003058_140--Hb_004162_220 Hb_000137_010 Hb_000137_010 Hb_003058_140--Hb_000137_010 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_000172_360--Hb_009158_060 Hb_000172_360--Hb_001159_060 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000406_210 Hb_000406_210 Hb_001159_060--Hb_000406_210 Hb_000815_300 Hb_000815_300 Hb_001159_060--Hb_000815_300 Hb_000862_100 Hb_000862_100 Hb_001159_060--Hb_000862_100 Hb_005305_130 Hb_005305_130 Hb_001159_060--Hb_005305_130 Hb_001159_060--Hb_009158_060 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66126 4.96311 6.65805 4.36207 1.9891 1.95702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81842 2.35221 0.946269 3.53966 5.59269

CAGE analysis