Hb_000137_010

Information

Type -
Description -
Location Contig137: 33046-43839
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25090g
description POPTRDRAFT_553234; hypothetical protein
nr
ID XP_012085046.1
description PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
swissprot
ID Q9SU72
description Protein EDS1 OS=Arabidopsis thaliana GN=EDS1 PE=1 SV=1
trembl
ID A0A067LA59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15127 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10245: 33315-36154 , PASA_asmbl_10246: 33315-36154 , PASA_asmbl_10247: 36455-37254 , PASA_asmbl_10248: 38850-42587 , PASA_asmbl_10249: 41565-41749 , PASA_asmbl_10250: 42638-43819 , PASA_asmbl_10251: 42979-43220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_010 0.0 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
2 Hb_000680_120 0.0485169341 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
3 Hb_000956_040 0.0754669479 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
4 Hb_000230_460 0.0778991534 - - Speckle-type POZ protein, putative [Ricinus communis]
5 Hb_000788_030 0.0781574243 - - PREDICTED: dynamin-2A [Jatropha curcas]
6 Hb_005305_100 0.0816122355 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_004774_090 0.082344134 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
8 Hb_001766_070 0.0828284194 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010287_020 0.0830104015 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_000476_060 0.0852608173 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000160_140 0.0852651414 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
12 Hb_003058_140 0.0862325147 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009288_010 0.0871139925 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_002203_030 0.0892021435 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
15 Hb_004659_010 0.0909271916 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
16 Hb_000003_680 0.0910866942 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
17 Hb_033152_090 0.0911400147 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
18 Hb_003540_250 0.0911698841 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
19 Hb_002259_170 0.0911990433 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
20 Hb_007416_260 0.0918460285 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000137_010 Hb_000137_010 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_000680_120--Hb_000230_460 Hb_000258_420 Hb_000258_420 Hb_000680_120--Hb_000258_420 Hb_000120_810 Hb_000120_810 Hb_000680_120--Hb_000120_810 Hb_178968_060 Hb_178968_060 Hb_000680_120--Hb_178968_060 Hb_000680_120--Hb_000788_030 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_000956_040--Hb_004774_090 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_111552_010 Hb_111552_010 Hb_004774_090--Hb_111552_010 Hb_004774_090--Hb_004324_360 Hb_000975_210 Hb_000975_210 Hb_004774_090--Hb_000975_210 Hb_004774_090--Hb_000788_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48245 8.04115 10.0534 6.37788 2.16266 2.69883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16667 3.66587 2.89685 3.75954 6.97817

CAGE analysis