Hb_010287_020

Information

Type -
Description -
Location Contig10287: 14261-20775
Sequence    

Annotation

kegg
ID rcu:RCOM_0327460
description CCR4-NOT transcription complex subunit, putative
nr
ID XP_002530232.1
description CCR4-NOT transcription complex subunit, putative [Ricinus communis]
swissprot
ID Q52JK6
description Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
trembl
ID B9SW63
description CCR4-NOT transcription complex subunit, putative OS=Ricinus communis GN=RCOM_0327460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable not transcription complex subunit vip2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01140: 14324-20750 , PASA_asmbl_01141: 16377-20175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010287_020 0.0 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
2 Hb_000868_120 0.0559066798 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
3 Hb_006452_180 0.0643582994 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_002110_160 0.0652851239 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
5 Hb_001699_010 0.0655867223 - - drought-inducible protein [Manihot esculenta]
6 Hb_033642_120 0.0705621267 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
7 Hb_000445_060 0.0709274101 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
8 Hb_000956_040 0.0714825441 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
9 Hb_000120_030 0.0723076639 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
10 Hb_001439_220 0.0749831019 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
11 Hb_005288_140 0.0755600286 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
12 Hb_000048_080 0.0766058357 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
13 Hb_023226_070 0.077378197 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000282_090 0.0792922215 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_000089_210 0.0796354343 - - unknown [Medicago truncatula]
16 Hb_000723_030 0.0797436787 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
17 Hb_033152_090 0.0804277347 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
18 Hb_000110_350 0.0804472246 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
19 Hb_001300_010 0.0808807814 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000086_420 0.0809962324 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_010287_020 Hb_010287_020 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_000868_120--Hb_000445_060 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_000868_120--Hb_000661_120 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_001009_120 Hb_001009_120 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_002110_160--Hb_004870_050 Hb_002110_160--Hb_000868_120 Hb_001699_010--Hb_000089_210 Hb_004994_240 Hb_004994_240 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_000120_030 Hb_000120_030 Hb_001699_010--Hb_000120_030 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_033642_120--Hb_000207_200 Hb_033642_120--Hb_001439_220 Hb_033642_120--Hb_000661_120 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18741 16.8421 16.1004 9.56244 5.81202 5.59397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88218 7.0797 5.49478 7.63937 9.32807

CAGE analysis