Hb_006452_180

Information

Type -
Description -
Location Contig6452: 164543-176070
Sequence    

Annotation

kegg
ID rcu:RCOM_0010990
description brca1-associated protein, putative
nr
ID XP_012073089.1
description PREDICTED: BRCA1-associated protein [Jatropha curcas]
swissprot
ID Q7Z569
description BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
trembl
ID A0A067KXL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06071 PE=4 SV=1
Gene Ontology
ID GO:0000151
description brca1-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52317: 164554-176041 , PASA_asmbl_52318: 164554-165269 , PASA_asmbl_52319: 173691-173977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_180 0.0 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
2 Hb_010287_020 0.0643582994 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
3 Hb_000048_080 0.0686896657 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
4 Hb_008725_050 0.0731324978 - - syntaxin, putative [Ricinus communis]
5 Hb_001245_050 0.0733519466 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
6 Hb_001009_120 0.0812836926 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
7 Hb_000089_210 0.0813740861 - - unknown [Medicago truncatula]
8 Hb_001699_010 0.0816971049 - - drought-inducible protein [Manihot esculenta]
9 Hb_003687_120 0.0827585785 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
10 Hb_033152_090 0.0839669233 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
11 Hb_005977_030 0.0846616458 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
12 Hb_000120_030 0.0863551524 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
13 Hb_002110_160 0.086668943 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
14 Hb_000156_090 0.086791275 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
15 Hb_004659_010 0.0886991988 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
16 Hb_003428_090 0.0902334841 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
17 Hb_000956_040 0.0917670471 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
18 Hb_005288_140 0.0921043539 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
19 Hb_003470_040 0.0927721156 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
20 Hb_000866_450 0.0934241354 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006452_180 Hb_006452_180 Hb_010287_020 Hb_010287_020 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_001009_120 Hb_001009_120 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_000086_430 Hb_000086_430 Hb_000048_080--Hb_000086_430 Hb_000375_290 Hb_000375_290 Hb_000048_080--Hb_000375_290 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_003687_120 Hb_003687_120 Hb_008725_050--Hb_003687_120 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_000890_160 Hb_000890_160 Hb_008725_050--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_008725_050--Hb_000156_090 Hb_003428_090 Hb_003428_090 Hb_008725_050--Hb_003428_090 Hb_003777_110 Hb_003777_110 Hb_001245_050--Hb_003777_110 Hb_000866_450 Hb_000866_450 Hb_001245_050--Hb_000866_450 Hb_000115_340 Hb_000115_340 Hb_001245_050--Hb_000115_340 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_001009_120--Hb_000956_040 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95733 17.2062 19.7731 11.8463 5.8962 6.16829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25298 7.52572 5.3215 7.22501 6.96706

CAGE analysis