Hb_002909_040

Information

Type desease resistance
Description Gene Name: AAA
Location Contig2909: 13989-19106
Sequence    

Annotation

kegg
ID rcu:RCOM_1270490
description 26S protease regulatory subunit 6b, putative (EC:3.6.4.3)
nr
ID XP_012086544.1
description PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
swissprot
ID Q9SEI4
description 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1
trembl
ID A0A067JP57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24155 PE=3 SV=1
Gene Ontology
ID GO:0005618
description 26s protease regulatory subunit 6b homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30463: 14001-19050 , PASA_asmbl_30464: 18231-19044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_040 0.0 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
2 Hb_004096_160 0.0580515673 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
3 Hb_000207_200 0.0593799499 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_000513_090 0.061533775 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
5 Hb_000089_210 0.0628675883 - - unknown [Medicago truncatula]
6 Hb_009449_060 0.0655947659 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
7 Hb_002326_110 0.0714053925 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
8 Hb_043792_010 0.0715368593 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
9 Hb_029695_080 0.0729408485 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
10 Hb_000085_170 0.073617141 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
11 Hb_000958_080 0.0737146047 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000236_490 0.074344262 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_001005_020 0.0753407501 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
14 Hb_002110_160 0.0753879176 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
15 Hb_005649_100 0.0778690541 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_003470_040 0.0783533419 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
17 Hb_000959_230 0.0796184456 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
18 Hb_002272_050 0.0805811064 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
19 Hb_004586_060 0.0808438312 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
20 Hb_013394_030 0.0816069734 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]

Gene co-expression network

sample Hb_002909_040 Hb_002909_040 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_000089_210 Hb_000089_210 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_009449_060 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_000207_200--Hb_000089_210 Hb_033642_120 Hb_033642_120 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_002110_160 Hb_002110_160 Hb_000207_200--Hb_002110_160 Hb_004586_060 Hb_004586_060 Hb_000513_090--Hb_004586_060 Hb_002014_010 Hb_002014_010 Hb_000513_090--Hb_002014_010 Hb_000139_320 Hb_000139_320 Hb_000513_090--Hb_000139_320 Hb_000340_030 Hb_000340_030 Hb_000513_090--Hb_000340_030 Hb_000513_090--Hb_000236_490 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.807 42.0791 68.8933 40.685 35.5282 24.5465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.335 27.0024 20.1248 34.2732 23.8978

CAGE analysis