Hb_007163_060

Information

Type -
Description -
Location Contig7163: 116257-121143
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14650g
description POPTRDRAFT_575673; hypothetical protein
nr
ID XP_012079517.1
description PREDICTED: protein RMD5 homolog A [Jatropha curcas]
swissprot
ID Q640V2
description Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1
trembl
ID A0A067KK11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12615 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein rmd5 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55463: 117292-120927 , PASA_asmbl_55464: 121836-134849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_060 0.0 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
2 Hb_005322_050 0.0590651345 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
3 Hb_172257_010 0.0670115656 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
4 Hb_004223_110 0.0675392299 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
5 Hb_003746_030 0.0734659969 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
6 Hb_000300_550 0.0744827663 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_009449_060 0.0765400855 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
8 Hb_000608_350 0.0817200212 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
9 Hb_000958_080 0.0828372462 - - conserved hypothetical protein [Ricinus communis]
10 Hb_073171_090 0.0869855095 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
11 Hb_164945_010 0.0928295325 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
12 Hb_000805_210 0.0949323956 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_000302_170 0.0961685512 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
14 Hb_000866_450 0.0996578272 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_004096_160 0.099711038 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
16 Hb_000046_080 0.1031325117 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
17 Hb_007800_020 0.103134526 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
18 Hb_000186_330 0.1041621534 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
19 Hb_027654_020 0.1081866888 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
20 Hb_001623_110 0.1090032806 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007163_060 Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_007163_060--Hb_005322_050 Hb_172257_010 Hb_172257_010 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_009449_060 Hb_172257_010--Hb_000302_170 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_004223_110--Hb_005322_050 Hb_000186_330 Hb_000186_330 Hb_003746_030--Hb_000186_330 Hb_001804_110 Hb_001804_110 Hb_003746_030--Hb_001804_110 Hb_000959_230 Hb_000959_230 Hb_003746_030--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_003746_030--Hb_010998_040 Hb_003746_030--Hb_004223_110 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_000300_550--Hb_027654_020 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_004096_160 Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6973 18.1426 26.1775 20.3425 15.3261 11.0534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28334 6.22176 4.45482 7.61993 6.41526

CAGE analysis