Hb_000300_550

Information

Type -
Description -
Location Contig300: 515798-523221
Sequence    

Annotation

kegg
ID cic:CICLE_v10019212mg
description hypothetical protein
nr
ID XP_012084594.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JTZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20181 PE=4 SV=1
Gene Ontology
ID GO:0005794
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31618: 515829-516542 , PASA_asmbl_31619: 516576-517555 , PASA_asmbl_31620: 522470-522811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_550 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_005322_050 0.0451916079 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
3 Hb_006022_010 0.0596252829 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
4 Hb_027654_020 0.0602101176 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
5 Hb_172257_010 0.0621744396 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
6 Hb_000302_170 0.0634147302 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
7 Hb_000640_190 0.0696963684 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
8 Hb_000046_600 0.0734393236 - - PREDICTED: cullin-1-like [Jatropha curcas]
9 Hb_007163_060 0.0744827663 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
10 Hb_001623_110 0.076415181 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
11 Hb_152910_010 0.0765525843 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
12 Hb_005403_010 0.0769325509 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
13 Hb_007800_020 0.077293267 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
14 Hb_000866_450 0.0784673036 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000958_080 0.0799002248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000784_080 0.0810174002 - - protein disulfide isomerase, putative [Ricinus communis]
17 Hb_000890_030 0.0814709016 - - plastid CUL1 [Hevea brasiliensis]
18 Hb_000580_030 0.0821253485 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_000994_020 0.082750127 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
20 Hb_000529_060 0.0828755194 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_550 Hb_000300_550 Hb_005322_050 Hb_005322_050 Hb_000300_550--Hb_005322_050 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_027654_020 Hb_027654_020 Hb_000300_550--Hb_027654_020 Hb_172257_010 Hb_172257_010 Hb_000300_550--Hb_172257_010 Hb_000302_170 Hb_000302_170 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_007163_060 Hb_007163_060 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_005322_050--Hb_027654_020 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_001623_110 Hb_001623_110 Hb_006022_010--Hb_001623_110 Hb_002249_020 Hb_002249_020 Hb_006022_010--Hb_002249_020 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_027654_020--Hb_000046_600 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_007163_060 Hb_009449_060 Hb_009449_060 Hb_172257_010--Hb_009449_060 Hb_172257_010--Hb_000302_170 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_000302_170--Hb_152910_010 Hb_033152_090 Hb_033152_090 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63783 4.89812 5.50534 4.74372 3.28108 2.55778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03217 1.23103 1.40558 2.36724 2.45931

CAGE analysis