Hb_000102_050

Information

Type transcription factor
Description TF Family: RB
Location Contig102: 94121-102632
Sequence    

Annotation

kegg
ID rcu:RCOM_1264670
description hypothetical protein
nr
ID XP_002529988.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SVG9
description Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
trembl
ID A0A067L458
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03096 PE=4 SV=1
Gene Ontology
ID GO:0005634
description retinoblastoma-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00957: 94032-97756 , PASA_asmbl_00958: 94147-97402 , PASA_asmbl_00959: 97811-102522 , PASA_asmbl_00960: 99488-99871 , PASA_asmbl_00961: 98775-100080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000102_050 0.0 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
2 Hb_102438_030 0.0578947882 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
3 Hb_004032_230 0.0642304104 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
4 Hb_000340_030 0.0671496036 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
5 Hb_000529_060 0.0680668847 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
6 Hb_005333_140 0.0706505205 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
7 Hb_000302_170 0.072395918 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_012565_050 0.0742005201 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
9 Hb_008165_030 0.0747523285 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
10 Hb_004724_370 0.0748531079 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
11 Hb_000189_630 0.0756693358 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_002811_040 0.0786171184 - - 5'->3' exoribonuclease, putative [Ricinus communis]
13 Hb_004976_010 0.0794386952 - - hypothetical protein RCOM_1429110 [Ricinus communis]
14 Hb_000264_070 0.0794440428 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
15 Hb_000661_120 0.0800041663 - - cap binding protein, putative [Ricinus communis]
16 Hb_006573_160 0.0810657316 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_030545_030 0.0814368678 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
18 Hb_026980_020 0.0840564683 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
19 Hb_000139_320 0.0849316349 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
20 Hb_011972_020 0.085130016 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000102_050 Hb_000102_050 Hb_102438_030 Hb_102438_030 Hb_000102_050--Hb_102438_030 Hb_004032_230 Hb_004032_230 Hb_000102_050--Hb_004032_230 Hb_000340_030 Hb_000340_030 Hb_000102_050--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000102_050--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000102_050--Hb_005333_140 Hb_000302_170 Hb_000302_170 Hb_000102_050--Hb_000302_170 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_001231_090 Hb_001231_090 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140 Hb_001723_010 Hb_001723_010 Hb_000340_030--Hb_001723_010 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000340_030--Hb_000529_060 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_002461_020 Hb_002461_020 Hb_005333_140--Hb_002461_020 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_005322_050 Hb_005322_050 Hb_000302_170--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_000302_170--Hb_000300_550 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_000302_170--Hb_102438_030 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50156 16.1757 17.0154 9.05594 11.8122 7.85799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71687 5.6768 3.65335 9.92503 8.39851

CAGE analysis