Hb_152910_010

Information

Type -
Description -
Location Contig152910: 5323-8042
Sequence    

Annotation

kegg
ID rcu:RCOM_0911910
description hypothetical protein
nr
ID XP_012069924.1
description PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02184 PE=4 SV=1
Gene Ontology
ID GO:0009570
description spindle assembly abnormal 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13140: 5449-8268 , PASA_asmbl_13141: 5449-8324
cDNA
(Sanger)
(ID:Location)		 053_J05.ab1: 6550-8324

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152910_010 0.0 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
2 Hb_172257_010 0.0666573171 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
3 Hb_030545_030 0.0678405096 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
4 Hb_004319_050 0.072195068 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
5 Hb_000302_170 0.0738884634 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
6 Hb_000300_550 0.0765525843 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_000640_190 0.0799547613 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
8 Hb_102438_030 0.0802638623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_005322_050 0.0807105065 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
10 Hb_004526_010 0.0831740332 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
11 Hb_000260_770 0.0835347656 - - er lumen protein retaining receptor, putative [Ricinus communis]
12 Hb_002903_140 0.0837741821 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
13 Hb_005403_010 0.0838638368 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_000994_020 0.0856934746 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_000803_180 0.087413412 - - hexokinase [Manihot esculenta]
16 Hb_005288_140 0.0882175269 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
17 Hb_001259_110 0.0895536969 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
18 Hb_002553_010 0.0915230776 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
19 Hb_000046_600 0.0916234157 - - PREDICTED: cullin-1-like [Jatropha curcas]
20 Hb_002259_110 0.0923752514 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]

Gene co-expression network

sample Hb_152910_010 Hb_152910_010 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_172257_010--Hb_000300_550 Hb_007163_060 Hb_007163_060 Hb_172257_010--Hb_007163_060 Hb_009449_060 Hb_009449_060 Hb_172257_010--Hb_009449_060 Hb_172257_010--Hb_000302_170 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_004319_050--Hb_002903_140 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_000302_170--Hb_005322_050 Hb_000302_170--Hb_000300_550 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_000300_550--Hb_005322_050 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_027654_020 Hb_027654_020 Hb_000300_550--Hb_027654_020 Hb_000300_550--Hb_000640_190 Hb_033152_090 Hb_033152_090 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_002249_020 Hb_002249_020 Hb_000640_190--Hb_002249_020 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2555 100.635 98.4531 66.0738 46.4453 37.7429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9652 17.1819 15.5568 50.0064 34.4955

CAGE analysis