Hb_006022_010

Information

Type -
Description -
Location Contig6022: 3158-7169
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010632mg
description hypothetical protein
nr
ID XP_012065755.1
description PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
swissprot
ID P76093
description Uncharacterized protein YnbD OS=Escherichia coli (strain K12) GN=ynbD PE=1 SV=1
trembl
ID A0A067L4Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26492 PE=4 SV=1
Gene Ontology
ID GO:0008138
description dual specificity protein phosphatase 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50609: 3186-6932
cDNA
(Sanger)
(ID:Location)		 020_K15.ab1: 6194-6937 , 025_H08.ab1: 3500-6932 , 029_L07.ab1: 3502-6932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006022_010 0.0 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
2 Hb_000300_550 0.0596252829 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_000046_600 0.0764415166 - - PREDICTED: cullin-1-like [Jatropha curcas]
4 Hb_000640_190 0.0778214017 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_007800_020 0.0794095129 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
6 Hb_001623_110 0.0795759652 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
7 Hb_002249_020 0.0799908368 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
8 Hb_005403_010 0.0809206895 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
9 Hb_005322_050 0.0852785192 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
10 Hb_172257_010 0.089736729 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
11 Hb_015026_100 0.090252414 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
12 Hb_002311_190 0.090994037 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
13 Hb_000890_030 0.0912157517 - - plastid CUL1 [Hevea brasiliensis]
14 Hb_020141_040 0.0917754057 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
15 Hb_005895_010 0.0924441163 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
16 Hb_006573_160 0.0930288038 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_023344_140 0.0935152013 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
18 Hb_012760_030 0.094123895 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
19 Hb_000580_030 0.0974555863 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_027654_020 0.0975145159 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]

Gene co-expression network

sample Hb_006022_010 Hb_006022_010 Hb_000300_550 Hb_000300_550 Hb_006022_010--Hb_000300_550 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_000640_190 Hb_000640_190 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_001623_110 Hb_001623_110 Hb_006022_010--Hb_001623_110 Hb_002249_020 Hb_002249_020 Hb_006022_010--Hb_002249_020 Hb_005322_050 Hb_005322_050 Hb_000300_550--Hb_005322_050 Hb_027654_020 Hb_027654_020 Hb_000300_550--Hb_027654_020 Hb_172257_010 Hb_172257_010 Hb_000300_550--Hb_172257_010 Hb_000302_170 Hb_000302_170 Hb_000300_550--Hb_000302_170 Hb_000300_550--Hb_000640_190 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_033152_090 Hb_033152_090 Hb_000640_190--Hb_033152_090 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_012760_030 Hb_012760_030 Hb_001623_110--Hb_012760_030 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_001623_110--Hb_007800_020 Hb_000805_210 Hb_000805_210 Hb_001623_110--Hb_000805_210 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1574 24.9131 29.9199 28.2977 16.7989 15.9767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56317 5.02729 7.07173 11.4581 18.9152

CAGE analysis