Hb_012760_030

Information

Type -
Description -
Location Contig12760: 7912-11549
Sequence    

Annotation

kegg
ID cit:102615950
description prolyl 4-hydroxylase subunit alpha-1-like
nr
ID XP_012491474.1
description PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
swissprot
ID F4JZ24
description Probable prolyl 4-hydroxylase 10 OS=Arabidopsis thaliana GN=P4H10 PE=2 SV=1
trembl
ID A0A0D2SMQ1
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G190600 PE=4 SV=1
Gene Ontology
ID GO:0005506
description probable prolyl 4-hydroxylase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08413: 7943-11549 , PASA_asmbl_08414: 8186-10918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_030 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
2 Hb_000784_080 0.0677121518 - - protein disulfide isomerase, putative [Ricinus communis]
3 Hb_001623_110 0.0687463161 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
4 Hb_000890_030 0.0737457564 - - plastid CUL1 [Hevea brasiliensis]
5 Hb_000671_030 0.0790729784 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
6 Hb_007919_110 0.0798504056 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
7 Hb_004724_390 0.0832563221 - - PREDICTED: nicalin-1-like [Populus euphratica]
8 Hb_000805_210 0.0838577101 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
9 Hb_002045_170 0.0887404802 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
10 Hb_006120_050 0.0911772797 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
11 Hb_000300_550 0.091474492 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_003777_130 0.0919945517 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
13 Hb_000054_040 0.0922182142 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
14 Hb_006022_010 0.094123895 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
15 Hb_003449_100 0.0956733341 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
16 Hb_000958_080 0.095709825 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001250_050 0.0959840217 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_000622_340 0.0964523926 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
19 Hb_000258_220 0.098315701 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
20 Hb_000317_110 0.0983327183 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_030 Hb_012760_030 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_001623_110 Hb_001623_110 Hb_012760_030--Hb_001623_110 Hb_000890_030 Hb_000890_030 Hb_012760_030--Hb_000890_030 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_000300_550 Hb_000300_550 Hb_000784_080--Hb_000300_550 Hb_000994_020 Hb_000994_020 Hb_000784_080--Hb_000994_020 Hb_000784_080--Hb_001623_110 Hb_027654_020 Hb_027654_020 Hb_000784_080--Hb_027654_020 Hb_000784_080--Hb_004724_390 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_006022_010 Hb_006022_010 Hb_001623_110--Hb_006022_010 Hb_007800_020 Hb_007800_020 Hb_001623_110--Hb_007800_020 Hb_000805_210 Hb_000805_210 Hb_001623_110--Hb_000805_210 Hb_000890_030--Hb_000580_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000890_030--Hb_000805_210 Hb_003777_130 Hb_003777_130 Hb_000671_030--Hb_003777_130 Hb_003849_220 Hb_003849_220 Hb_000671_030--Hb_003849_220 Hb_000671_030--Hb_001623_110 Hb_017948_030 Hb_017948_030 Hb_000671_030--Hb_017948_030 Hb_000671_030--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_002687_180 Hb_002687_180 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_000317_110 Hb_000317_110 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7631 57.2308 69.8721 86.6409 39.4121 23.2593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1815 14.174 21.6923 36.8567 35.748

CAGE analysis