Hb_003449_100

Information

Type -
Description -
Location Contig3449: 205601-209317
Sequence    

Annotation

kegg
ID crb:CARUB_v10014326mg
description hypothetical protein
nr
ID XP_012074065.1
description PREDICTED: protein YIPF6 homolog [Jatropha curcas]
swissprot
ID Q54RZ2
description Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2
trembl
ID A0A067KVV4
description Protein YIPF OS=Jatropha curcas GN=JCGZ_08674 PE=3 SV=1
Gene Ontology
ID GO:0005634
description protein yipf6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35969: 205790-209503
cDNA
(Sanger)
(ID:Location)		 035_O23.ab1: 205799-209100 , 041_P16.ab1: 205790-207779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003449_100 0.0 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
2 Hb_000703_160 0.0519311196 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
3 Hb_007919_110 0.0684251104 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
4 Hb_002249_020 0.0718070186 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
5 Hb_002304_050 0.0723503141 - - pyruvate kinase, putative [Ricinus communis]
6 Hb_000753_160 0.0762196951 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
7 Hb_000958_080 0.0786672961 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000089_210 0.0871410122 - - unknown [Medicago truncatula]
9 Hb_004724_390 0.0871806962 - - PREDICTED: nicalin-1-like [Populus euphratica]
10 Hb_074399_010 0.0876510363 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
11 Hb_000258_420 0.087888409 - - sucrose transporter 2A [Hevea brasiliensis]
12 Hb_003506_030 0.0885166544 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_002615_070 0.0888922755 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
14 Hb_002687_180 0.0889852568 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
15 Hb_004096_160 0.0900565315 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
16 Hb_016448_010 0.0906468532 - - Protein MYG1, putative [Ricinus communis]
17 Hb_161568_010 0.0921284228 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_001799_160 0.0925046653 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_004712_190 0.0934329661 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
20 Hb_000086_270 0.0942206047 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_003449_100 Hb_003449_100 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_007919_110 Hb_007919_110 Hb_003449_100--Hb_007919_110 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_003449_100--Hb_000753_160 Hb_000958_080 Hb_000958_080 Hb_003449_100--Hb_000958_080 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_000703_160--Hb_007919_110 Hb_005144_210 Hb_005144_210 Hb_000703_160--Hb_005144_210 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000703_160--Hb_000958_080 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100 Hb_002304_050--Hb_000753_160 Hb_013726_050 Hb_013726_050 Hb_002304_050--Hb_013726_050 Hb_002687_180 Hb_002687_180 Hb_002304_050--Hb_002687_180 Hb_001250_050 Hb_001250_050 Hb_002304_050--Hb_001250_050 Hb_002304_050--Hb_002272_240 Hb_000753_160--Hb_001250_050 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.573 23.9695 46.5397 35.9686 13.876 11.3047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53858 11.7005 10.4387 14.5081 18.0795

CAGE analysis