Hb_003228_100

Information

Type -
Description -
Location Contig3228: 149530-176554
Sequence    

Annotation

kegg
ID rcu:RCOM_0279080
description kinesin heavy chain, putative
nr
ID XP_012076051.1
description PREDICTED: kinesin-related protein 4 [Jatropha curcas]
swissprot
ID Q6S001
description Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1
trembl
ID A0A067KED0
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_12760 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-related protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34230: 149537-161778 , PASA_asmbl_34231: 161801-176401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_100 0.0 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
2 Hb_000012_270 0.0707686314 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
3 Hb_002870_020 0.0722330693 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
4 Hb_004032_370 0.0779828926 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
5 Hb_006846_170 0.0783389973 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
6 Hb_002326_110 0.0784506067 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
7 Hb_002249_020 0.0802609495 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
8 Hb_005649_100 0.0810675807 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_006120_040 0.0846430481 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
10 Hb_087313_010 0.0851992998 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003506_030 0.0879855691 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000724_020 0.0889095728 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
13 Hb_000589_190 0.0894698565 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
14 Hb_016448_010 0.0902795706 - - Protein MYG1, putative [Ricinus communis]
15 Hb_000254_100 0.0905885431 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
16 Hb_000847_080 0.0924269089 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
17 Hb_000663_020 0.0927148839 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000663_080 0.0929012635 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
19 Hb_000975_210 0.0932018462 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_025668_010 0.0937933512 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_003228_100 Hb_003228_100 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_006846_170 Hb_006846_170 Hb_003228_100--Hb_006846_170 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_002249_020 Hb_002249_020 Hb_003228_100--Hb_002249_020 Hb_000959_220 Hb_000959_220 Hb_000012_270--Hb_000959_220 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020 Hb_002870_020--Hb_004032_370 Hb_001619_050 Hb_001619_050 Hb_002870_020--Hb_001619_050 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010 Hb_000445_140 Hb_000445_140 Hb_002870_020--Hb_000445_140 Hb_004096_060 Hb_004096_060 Hb_004032_370--Hb_004096_060 Hb_000724_020 Hb_000724_020 Hb_004032_370--Hb_000724_020 Hb_004032_370--Hb_002326_110 Hb_004032_370--Hb_077026_010 Hb_006846_170--Hb_002249_020 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3915 16.2816 36.9237 18.7305 16.5715 12.1195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.22085 6.75461 11.5374 10.6655 20.9498

CAGE analysis