Hb_002870_020

Information

Type -
Description -
Location Contig2870: 8991-15431
Sequence    

Annotation

kegg
ID rcu:RCOM_0904880
description hypothetical protein
nr
ID XP_012091353.1
description PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
swissprot
ID Q8GUI4
description Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1
trembl
ID A0A067JMN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21225 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29913: 12631-12982 , PASA_asmbl_29914: 9243-11874 , PASA_asmbl_29915: 10727-11190 , PASA_asmbl_29917: 14265-14450 , PASA_asmbl_29918: 9199-15337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002870_020 0.0 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
2 Hb_003228_100 0.0722330693 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
3 Hb_004032_370 0.0764729995 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
4 Hb_001619_050 0.0764840608 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
5 Hb_000663_020 0.0842308073 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
6 Hb_077026_010 0.0880217283 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
7 Hb_000445_140 0.0897051071 - - hypothetical protein RCOM_0561550 [Ricinus communis]
8 Hb_000012_270 0.0913696764 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
9 Hb_000098_240 0.092251425 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
10 Hb_000640_160 0.0924964082 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
11 Hb_000224_150 0.0929084471 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
12 Hb_005895_010 0.0931324495 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
13 Hb_006326_050 0.0932132561 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_065755_030 0.0932414347 - - -
15 Hb_006120_040 0.093673056 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
16 Hb_032202_080 0.0937320671 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_065525_130 0.0937527664 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_000847_080 0.095259438 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
19 Hb_000085_140 0.0953602136 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
20 Hb_003225_020 0.0953873437 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_002870_020 Hb_002870_020 Hb_003228_100 Hb_003228_100 Hb_002870_020--Hb_003228_100 Hb_004032_370 Hb_004032_370 Hb_002870_020--Hb_004032_370 Hb_001619_050 Hb_001619_050 Hb_002870_020--Hb_001619_050 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010 Hb_000445_140 Hb_000445_140 Hb_002870_020--Hb_000445_140 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_003228_100--Hb_004032_370 Hb_006846_170 Hb_006846_170 Hb_003228_100--Hb_006846_170 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_002249_020 Hb_002249_020 Hb_003228_100--Hb_002249_020 Hb_004096_060 Hb_004096_060 Hb_004032_370--Hb_004096_060 Hb_000724_020 Hb_000724_020 Hb_004032_370--Hb_000724_020 Hb_004032_370--Hb_002326_110 Hb_004032_370--Hb_077026_010 Hb_001619_050--Hb_000445_140 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_001014_100 Hb_001014_100 Hb_001619_050--Hb_001014_100 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000847_080 Hb_000847_080 Hb_077026_010--Hb_000847_080 Hb_002874_180 Hb_002874_180 Hb_077026_010--Hb_002874_180 Hb_021943_080 Hb_021943_080 Hb_077026_010--Hb_021943_080 Hb_000120_210 Hb_000120_210 Hb_077026_010--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_077026_010--Hb_004096_240 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.66778 6.92641 19.1597 8.42166 8.51233 7.35926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31602 3.55353 3.81876 4.96494 10.2884

CAGE analysis