Hb_000663_020

Information

Type -
Description -
Location Contig663: 32626-41979
Sequence    

Annotation

kegg
ID rcu:RCOM_1017520
description NADH dehydrogenase, putative (EC:1.6.99.3)
nr
ID XP_012078893.1
description PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q8GXR9
description Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2
trembl
ID A0A067KJN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13405 PE=4 SV=1
Gene Ontology
ID GO:0003954
description alternative nad h-ubiquinone oxidoreductase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53089: 35417-35681 , PASA_asmbl_53090: 35910-41869 , PASA_asmbl_53091: 37263-41915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000663_020 0.0 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
2 Hb_005731_110 0.064010511 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
3 Hb_002218_020 0.0685007749 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
4 Hb_001195_270 0.0723500339 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
5 Hb_077026_010 0.0782206559 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
6 Hb_005162_110 0.0794655909 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
7 Hb_003506_030 0.081278431 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000640_160 0.0823705204 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
9 Hb_002870_020 0.0842308073 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
10 Hb_087313_010 0.0846754658 - - conserved hypothetical protein [Ricinus communis]
11 Hb_178968_140 0.0854193354 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_102948_010 0.086352258 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
13 Hb_003752_070 0.0864866235 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
14 Hb_003225_020 0.08728206 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
15 Hb_002874_180 0.087285678 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
16 Hb_065755_030 0.0887863989 - - -
17 Hb_004096_240 0.0896865065 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_000120_210 0.090110712 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
19 Hb_000703_290 0.0907648928 - - aldo/keto reductase, putative [Ricinus communis]
20 Hb_000012_270 0.0925402601 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000663_020 Hb_000663_020 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_003752_070 Hb_003752_070 Hb_001195_270--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_001195_270--Hb_021650_010 Hb_001195_270--Hb_005731_110 Hb_001195_270--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_001195_270--Hb_000051_060 Hb_000847_080 Hb_000847_080 Hb_077026_010--Hb_000847_080 Hb_002874_180 Hb_002874_180 Hb_077026_010--Hb_002874_180 Hb_021943_080 Hb_021943_080 Hb_077026_010--Hb_021943_080 Hb_000120_210 Hb_000120_210 Hb_077026_010--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_077026_010--Hb_004096_240 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005162_110--Hb_000051_060 Hb_005162_110--Hb_003752_070 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38563 9.396 23.3756 11.6481 9.39926 8.41138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.53033 7.26137 3.99924 4.42598 14.464

CAGE analysis