Hb_005731_110

Information

Type -
Description -
Location Contig5731: 122888-126628
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33460g
description POPTRDRAFT_839072; hypothetical protein
nr
ID XP_011000958.1
description PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
swissprot
ID Q9SGA0
description ACT domain-containing protein ACR6 OS=Arabidopsis thaliana GN=ACR6 PE=2 SV=1
trembl
ID B9P4Y4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33460g PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49494: 123035-126494 , PASA_asmbl_49495: 125070-126516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_110 0.0 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
2 Hb_000640_160 0.0628729823 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
3 Hb_000663_020 0.064010511 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000959_220 0.0720129326 - - zinc finger protein, putative [Ricinus communis]
5 Hb_005162_110 0.0741805389 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
6 Hb_003225_020 0.0753481733 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
7 Hb_065755_030 0.0792856499 - - -
8 Hb_000012_270 0.0851159074 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
9 Hb_178968_140 0.0867882289 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_021650_010 0.0909686431 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
11 Hb_001195_270 0.0918489079 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_000085_190 0.0926487618 - - FtsZ1 protein [Manihot esculenta]
13 Hb_002218_020 0.0934994216 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_001930_030 0.0950754571 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
15 Hb_000051_060 0.0955913973 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002870_020 0.0975969549 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
17 Hb_003752_070 0.1003090736 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
18 Hb_002874_180 0.1005272516 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
19 Hb_004994_080 0.1016890345 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_006555_040 0.10186181 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_110 Hb_005731_110 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_000640_160--Hb_003225_020 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000012_270 Hb_000012_270 Hb_000959_220--Hb_000012_270 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_003225_020--Hb_001619_050 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6047 12.9784 34.9035 11.0945 12.6417 12.3828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7766 11.2422 7.45916 5.30521 17.6852

CAGE analysis