Hb_000959_220

Information

Type -
Description -
Location Contig959: 195534-200406
Sequence    

Annotation

kegg
ID rcu:RCOM_0132040
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_002532773.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SB58
description Protein S-acyltransferase 8 OS=Arabidopsis thaliana GN=PAT08 PE=1 SV=2
trembl
ID B9T3F4
description S-acyltransferase OS=Ricinus communis GN=RCOM_0132040 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein s-acyltransferase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63656: 196471-199381 , PASA_asmbl_63657: 197002-197193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_220 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_005731_110 0.0720129326 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
3 Hb_000012_270 0.0741615565 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
4 Hb_065755_030 0.0811543217 - - -
5 Hb_001322_020 0.0873828155 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
6 Hb_011249_030 0.0933220632 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
7 Hb_006615_050 0.094101949 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
8 Hb_143766_020 0.094931575 - - putative phospholipase A2 [Gossypium arboreum]
9 Hb_005162_110 0.095482666 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
10 Hb_000663_020 0.0959169277 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_005649_100 0.0978623519 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_000340_130 0.0978666935 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
13 Hb_001005_020 0.0999055208 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
14 Hb_001277_280 0.1025994023 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
15 Hb_003760_030 0.1034979518 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
16 Hb_000287_050 0.1037598875 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
17 Hb_015292_040 0.1044741202 - - PREDICTED: myb-like protein X [Jatropha curcas]
18 Hb_000003_170 0.1053325397 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
19 Hb_004128_200 0.1061600647 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
20 Hb_010098_020 0.1069138625 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000959_220 Hb_000959_220 Hb_005731_110 Hb_005731_110 Hb_000959_220--Hb_005731_110 Hb_000012_270 Hb_000012_270 Hb_000959_220--Hb_000012_270 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_005731_110--Hb_065755_030 Hb_003228_100 Hb_003228_100 Hb_000012_270--Hb_003228_100 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_000012_270--Hb_005731_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_011249_030--Hb_065755_030 Hb_004807_020 Hb_004807_020 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97972 6.25999 18.698 6.20898 7.87261 4.71111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02488 6.4486 4.0684 3.40466 6.51987

CAGE analysis