Hb_001277_280

Information

Type -
Description -
Location Contig1277: 241661-250661
Sequence    

Annotation

kegg
ID rcu:RCOM_0910940
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_012069721.1
description PREDICTED: protein argonaute 10 [Jatropha curcas]
swissprot
ID Q9XGW1
description Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1
trembl
ID A0A067KVV2
description Protein argonaute OS=Jatropha curcas GN=JCGZ_02240 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08484: 241679-243196 , PASA_asmbl_08485: 242283-243040 , PASA_asmbl_08487: 243212-250711 , PASA_asmbl_08488: 246034-246349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_280 0.0 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
2 Hb_011249_030 0.078563539 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
3 Hb_006816_100 0.0788172398 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
4 Hb_004128_200 0.0958023104 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
5 Hb_000959_220 0.1025994023 - - zinc finger protein, putative [Ricinus communis]
6 Hb_001517_050 0.1035233367 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
7 Hb_001005_020 0.1103636757 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
8 Hb_000340_130 0.1132185323 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
9 Hb_002284_150 0.1144578312 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
10 Hb_011671_310 0.1146092122 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
11 Hb_003213_010 0.1160905301 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
12 Hb_010080_010 0.1173491197 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
13 Hb_065755_030 0.1176581273 - - -
14 Hb_000287_050 0.1189745119 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
15 Hb_003760_030 0.1192154507 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
16 Hb_005194_020 0.1213883592 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
17 Hb_001322_020 0.1215557106 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
18 Hb_003119_090 0.1222498331 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
19 Hb_003579_050 0.1222609613 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
20 Hb_000959_230 0.1224734912 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]

Gene co-expression network

sample Hb_001277_280 Hb_001277_280 Hb_011249_030 Hb_011249_030 Hb_001277_280--Hb_011249_030 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_004128_200 Hb_004128_200 Hb_001277_280--Hb_004128_200 Hb_000959_220 Hb_000959_220 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001005_020 Hb_001005_020 Hb_001277_280--Hb_001005_020 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_002284_210 Hb_002284_210 Hb_006816_100--Hb_002284_210 Hb_003760_030 Hb_003760_030 Hb_006816_100--Hb_003760_030 Hb_006816_100--Hb_001517_050 Hb_002485_030 Hb_002485_030 Hb_006816_100--Hb_002485_030 Hb_006816_100--Hb_065755_030 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_004128_200--Hb_001005_020 Hb_004128_200--Hb_039605_010 Hb_005731_110 Hb_005731_110 Hb_000959_220--Hb_005731_110 Hb_000012_270 Hb_000012_270 Hb_000959_220--Hb_000012_270 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_000300_260 Hb_000300_260 Hb_001517_050--Hb_000300_260 Hb_002284_150 Hb_002284_150 Hb_001517_050--Hb_002284_150 Hb_000789_320 Hb_000789_320 Hb_001517_050--Hb_000789_320 Hb_012340_090 Hb_012340_090 Hb_001517_050--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_001517_050--Hb_003213_010 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_007290_030 Hb_007290_030 Hb_001005_020--Hb_007290_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96181 2.59994 9.16508 3.09547 3.46421 2.98053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93844 2.42998 2.23546 1.67368 1.50889

CAGE analysis