Hb_002284_210

Information

Type -
Description -
Location Contig2284: 152401-155729
Sequence    

Annotation

kegg
ID rcu:RCOM_1601670
description hypothetical protein
nr
ID XP_012073621.1
description PREDICTED: protein canopy-1 [Jatropha curcas]
swissprot
ID Q2L6L1
description Protein canopy-1 OS=Danio rerio GN=cnpy1 PE=1 SV=1
trembl
ID A0A067KY69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08060 PE=4 SV=1
Gene Ontology
ID GO:0006950
description protein canopy-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23813: 152340-155512 , PASA_asmbl_23814: 152340-154580 , PASA_asmbl_23815: 152595-155512
cDNA
(Sanger)
(ID:Location)		 002_F21.ab1: 152618-155512

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_210 0.0 - - PREDICTED: protein canopy-1 [Jatropha curcas]
2 Hb_006816_100 0.0842101246 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
3 Hb_003760_030 0.0870094822 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
4 Hb_002874_180 0.0871638026 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
5 Hb_010098_020 0.0938648551 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_143766_020 0.0944469926 - - putative phospholipase A2 [Gossypium arboreum]
7 Hb_002686_080 0.0975002798 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
8 Hb_001517_050 0.0996721027 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
9 Hb_001085_260 0.1017539991 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
10 Hb_000163_260 0.1026427827 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
11 Hb_000003_170 0.1037881471 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
12 Hb_000340_130 0.107226988 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
13 Hb_007007_040 0.1078908558 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_002485_030 0.1080958717 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
15 Hb_003119_090 0.1092225326 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
16 Hb_000890_130 0.1094140107 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
17 Hb_002316_140 0.1098215844 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
18 Hb_077026_010 0.1109572927 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
19 Hb_005064_010 0.112262339 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
20 Hb_001675_300 0.1130495249 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_210 Hb_002284_210 Hb_006816_100 Hb_006816_100 Hb_002284_210--Hb_006816_100 Hb_003760_030 Hb_003760_030 Hb_002284_210--Hb_003760_030 Hb_002874_180 Hb_002874_180 Hb_002284_210--Hb_002874_180 Hb_010098_020 Hb_010098_020 Hb_002284_210--Hb_010098_020 Hb_143766_020 Hb_143766_020 Hb_002284_210--Hb_143766_020 Hb_002686_080 Hb_002686_080 Hb_002284_210--Hb_002686_080 Hb_001277_280 Hb_001277_280 Hb_006816_100--Hb_001277_280 Hb_006816_100--Hb_003760_030 Hb_001517_050 Hb_001517_050 Hb_006816_100--Hb_001517_050 Hb_002485_030 Hb_002485_030 Hb_006816_100--Hb_002485_030 Hb_065755_030 Hb_065755_030 Hb_006816_100--Hb_065755_030 Hb_003119_090 Hb_003119_090 Hb_003760_030--Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003760_030--Hb_007007_040 Hb_003760_030--Hb_065755_030 Hb_000751_030 Hb_000751_030 Hb_003760_030--Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_003760_030--Hb_001501_080 Hb_003760_030--Hb_002485_030 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_002316_140 Hb_002316_140 Hb_010098_020--Hb_002316_140 Hb_000537_100 Hb_000537_100 Hb_010098_020--Hb_000537_100 Hb_146255_020 Hb_146255_020 Hb_010098_020--Hb_146255_020 Hb_006615_050 Hb_006615_050 Hb_010098_020--Hb_006615_050 Hb_002572_020 Hb_002572_020 Hb_010098_020--Hb_002572_020 Hb_000012_270 Hb_000012_270 Hb_143766_020--Hb_000012_270 Hb_000959_220 Hb_000959_220 Hb_143766_020--Hb_000959_220 Hb_000663_020 Hb_000663_020 Hb_143766_020--Hb_000663_020 Hb_143766_020--Hb_002874_180 Hb_143766_020--Hb_003760_030 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6828 8.70692 44.197 27.5643 14.4253 15.2032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5513 16.5545 8.01888 9.63298 15.0264

CAGE analysis