Hb_002572_020

Information

Type transcription factor
Description TF Family: SBP
Location Contig2572: 11651-16315
Sequence    

Annotation

kegg
ID pop:POPTR_0005s28010g
description POPTRDRAFT_560022; hypothetical protein
nr
ID XP_002307005.2
description hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
swissprot
ID Q8RY95
description Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3
trembl
ID B9H5Y0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28010g PE=4 SV=2
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26761: 11975-12453 , PASA_asmbl_26762: 11975-13288 , PASA_asmbl_26763: 13617-14096 , PASA_asmbl_26764: 14584-16190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002572_020 0.0 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
2 Hb_000603_160 0.0611701141 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
3 Hb_002316_140 0.0657189283 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
4 Hb_002413_010 0.0677503808 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000365_230 0.0733852253 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
6 Hb_000173_310 0.0753970643 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
7 Hb_183433_010 0.0755616738 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_157023_020 0.0757449436 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000028_520 0.0787495551 - - hypothetical protein L484_025125 [Morus notabilis]
10 Hb_002157_120 0.0804542363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_171900_090 0.0813508798 - - conserved hypothetical protein [Ricinus communis]
12 Hb_155215_020 0.0831486445 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
13 Hb_000300_260 0.0832844282 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
14 Hb_000035_090 0.0832911761 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
15 Hb_004607_090 0.0833958628 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
16 Hb_001623_270 0.083625737 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
17 Hb_000230_460 0.0842989351 - - Speckle-type POZ protein, putative [Ricinus communis]
18 Hb_005563_070 0.0844189283 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
19 Hb_000375_390 0.0844253516 - - poly-A binding protein, putative [Ricinus communis]
20 Hb_000058_130 0.0847775872 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]

Gene co-expression network

sample Hb_002572_020 Hb_002572_020 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_002316_140--Hb_000537_100 Hb_001178_010 Hb_001178_010 Hb_002316_140--Hb_001178_010 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_164390_010 Hb_164390_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_003213_010 Hb_003213_010 Hb_000173_310--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000173_310--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_000173_310--Hb_000300_260 Hb_004312_010 Hb_004312_010 Hb_000173_310--Hb_004312_010 Hb_000173_310--Hb_002413_010 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_183433_010--Hb_007248_030 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06946 4.39636 6.98133 6.62075 3.09759 2.98848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96567 5.08764 2.73421 2.9456 4.95006

CAGE analysis